Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0389.Seq
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   8.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 123 CVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMYT 242
           C +C+K + Q    VIH+   T     + +VC  C + +T
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGE---KPYVCKACGKGFT 214



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 123 CVLCTKKYDQYDDYVIHI 176
           C+LC K +DQ + Y  H+
Sbjct: 64  CLLCQKAFDQKNLYQSHL 81


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 566 GNMLLVNCTFNNKKCLGYRCF 628
           GN   +   FN ++ LGY  F
Sbjct: 198 GNFTCIQIVFNLRRRLGYHLF 218


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 325 LAIISDTGFWRIVDKVSYP 269
           L +IS   +W I D  +YP
Sbjct: 137 LCVISLDRYWAITDPFTYP 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,444
Number of Sequences: 438
Number of extensions: 4471
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)