Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0389.Seq
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54020.1 68418.m06719 expressed protein                             29   3.0  
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains...    29   4.0  
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    28   7.0  

>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 135 TKKYDQYDDYVIHINECTMNVKLQHFVCPICH 230
           T   D  DD+  H   C   +KL+HF C IC+
Sbjct: 81  TPLVDSTDDHFCHF--CRSKLKLKHFRCTICN 110


>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 820

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 637 GSKEASVPQAFFIIKCTIN*QHIPHVSSFIMPIPNMIHMRHALNIDSLIPQFREKV 470
           GS E+S      I +CTI  +H     S + P  N    RH    D+L  + +E V
Sbjct: 752 GSSESSEDDVTDITQCTIKTRHFEQALSLVSPSVNKQQRRH---YDALSTKLQESV 804


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
            kinase, putative 
          Length = 1007

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 315  IMARTVLISLYTVKPSPSQPDVRLVGQ--SKIFIKK 416
            ++   + ++L  + P+P +PD++LV Q  S+I +K+
Sbjct: 969  VLTDVLQVALSCISPAPERPDMKLVSQELSRIVLKR 1004


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,556
Number of Sequences: 28952
Number of extensions: 321284
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)