Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0386.Seq
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    32   0.12 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.5  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   4.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   4.5  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   4.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   7.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   7.8  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -3

Query: 424 KKEASAGNFADLLAHSDG--LIKNISDDLRAL--DKLIVKPNAVNGELSEDDIQLFPL 263
           KK  +      ++AH  G  +   + DDLR L   +   KP A+N  L+ED    FPL
Sbjct: 10  KKAPNGYGITPIVAHKTGEPVRYEVEDDLRKLKPSRTAPKPPAINTNLAEDTFSGFPL 67


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 421 KEASAGNFADLLAHSDGLIKNISDDLRALDKLIVKPNAVNGELSED 284
           K AS   FA+LL +     KN  DD + +D+ + K +    ELS++
Sbjct: 462 KRASRSKFAELLGYKTLKPKNDEDDSK-VDESVAKDSTTPNELSKN 506


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 427 DKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVKPNAVNGELSE 287
           DKK+ SA N ADL    +G  K   ++L   D  I +      +L+E
Sbjct: 548 DKKDISAVNLADLNKRFEGFEKRYEEELAIRDWKIAQLEDKLAKLTE 594


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 412 WPLSCRRNICARREI-NIPMLYVSHSLDEILHLADRVMVLENGQVKA 549
           W    +  + A   + NIP   + HS   IL+ AD ++++ N    A
Sbjct: 291 WDFRVQAQLVATAPVRNIPPTGIEHSYQRILYFADDMLLILNSHTLA 337


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = +1

Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ*RDESVAAERATK*HSESER 639
           +++++H    I  +A+ + +++NG VK F      +     + +A ER  +   E E+
Sbjct: 762 VVFITHDFRLIDQVAEEIWIVQNGTVKEFDGEIRDYKMMLKQQIAKEREEERRIELEK 819


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 211 ITAIIWRNRHKSICY 167
           +T++IW  R+K  CY
Sbjct: 378 VTSVIWSRRYKEFCY 392


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 552 KGFHLTVFQYHHSVCQMEDLIQRMAD 475
           KG+H+ +     S   M+D+I+R+AD
Sbjct: 109 KGYHVQITGRESSDLNMDDIIRRVAD 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,519
Number of Sequences: 5004
Number of extensions: 64555
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)