Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0386.Seq
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957... 31 1.2
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 31 1.2
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 31 1.5
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 29 4.7
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 29 6.2
02_01_0063 - 451471-451725,451825-451913,452028-452133,452214-45... 29 6.2
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 28 8.2
>08_02_0582 +
18993816-18993890,18994050-18994446,18995645-18995748,
18995863-18996004,18996118-18996237,18996341-18996465,
18996903-18997061,18997161-18997323,18997420-18997545,
18997628-18997711,18997761-18998173,18998199-18998273,
18998463-18998663,18998862-18998971,18999072-18999156,
18999365-18999493,18999596-18999701,18999825-18999913,
19000064-19000366
Length = 1001
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
N+ R + N ++ +HS++E L DRV + +G + G +E+
Sbjct: 857 NVIKRAKKNCTIILTTHSMEEAEELCDRVGIFVDGNFQCLGTPKEL 902
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 647 LKHRSLSECYFVALSAATDSSRYCPHTSSSAPK-AFT*PFSSTI 519
L+ R+L C+ VAL+ S+ + P SSSAP A PF+S++
Sbjct: 84 LQCRALELCFNVALNRLPTSAPHSPPPSSSAPSGAVAPPFASSL 127
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
+LYV+H + E L AD +MV++NG++ G +E+
Sbjct: 612 VLYVTHQV-EFLVDADLIMVMQNGRIAQAGKFQEL 645
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 83 TRQQKKLKTAATREYRLPRRVRIKSPLMI 169
T+ +KK +TAA R+ RRV++ PL++
Sbjct: 602 TKLRKKQQTAAIHGLRIRRRVKVNKPLVL 630
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
++ +HS++E L DR+ ++ NG ++ G +E+
Sbjct: 831 IILTTHSMEEAEFLCDRIGIIANGSLQCIGNSKEL 865
>02_01_0063 -
451471-451725,451825-451913,452028-452133,452214-452342,
452886-452970,453514-453545
Length = 231
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
++ +HS++E L DR+ ++ NG ++ G +E+
Sbjct: 114 IILTTHSMEEAEFLCDRIGIIANGSLQCIGNSKEL 148
>02_02_0490 -
10879761-10879861,10879946-10880185,10880274-10880337,
10880426-10880731,10881098-10881312,10881417-10881711,
10882193-10882357,10882477-10882527,10882657-10883109,
10883195-10883281,10883736-10884800,10884858-10885376
Length = 1186
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
++YV+H + E L AD +MV+++GQ+ G E+
Sbjct: 540 VVYVTHHV-EFLPSADAIMVMKDGQIIQVGNYAEI 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,515,384
Number of Sequences: 37544
Number of extensions: 478310
Number of successful extensions: 1214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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