Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0386.Seq
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)              32   0.51 
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   0.90 
SB_1654| Best HMM Match : ABC_tran (HMM E-Value=1.2)                   31   0.90 
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     31   0.90 
SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42)          30   2.1  
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42)          29   3.6  
SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)                   28   8.4  

>SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ*RD 588
           ++ V H +  +  +AD V VL  G V A G+LE+V    RD
Sbjct: 40  LMVVEHDMGFVGSIADHVTVLHQGSVLAEGSLEQVQNDERD 80


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 466  MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ*RDESVAAERATK*HSESER-C 642
            ++  SHS++E   L +RV ++ NGQ+K  G+ + +  +  D      R    + ++E+ C
Sbjct: 1544 VILTSHSMEECEALCNRVAIMVNGQMKCLGSPQHLKNKFGDGYTVILRVAGSNPDTEQVC 1603

Query: 643  LSIIR 657
              II+
Sbjct: 1604 QFIIQ 1608


>SB_1654| Best HMM Match : ABC_tran (HMM E-Value=1.2)
          Length = 94

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ 579
           +L ++H L  I+   DR+MVL +GQV   G  +E+ G+
Sbjct: 45  VLTIAHRLSTIMD-CDRIMVLHDGQVVEMGTPQELMGK 81


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 466  MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ 579
            +L ++H L  I+   DR+MVL +GQV   G  +E+ G+
Sbjct: 1653 VLTIAHRLSTIMD-CDRIMVLHDGQVVEMGTPQELMGK 1689


>SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42)
          Length = 355

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG 576
           +L ++H L  I+   DR+MVL +GQV   G  E + G
Sbjct: 306 VLIIAHRLSTIMD-CDRIMVLHDGQVVEMGTPEALMG 341


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
 Frame = -3

Query: 676  KKKXRNGG*CSSTVHFQNATLLLFRQPRIHHATAPTLLPARQRLSPDRFPVPSLCLPD-G 500
            KKK          V   N   LL   P I +     L PA Q  +PD   VPS   P   
Sbjct: 773  KKKIYKSSTPPPQVDIMNPLALLGMNPVIPNTYPSPLNPAFQSSTPDVNAVPSAPYPQAS 832

Query: 499  GSHPANG*HTTSEC*FPAARKYFVDKKEASAGNF 398
            G  P    +T ++  FP A+  +       AG +
Sbjct: 833  GVAPPYPLYTPADAAFPPAQAPYPPPYPTPAGGY 866


>SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42)
          Length = 347

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG 576
           +L ++H L  I+   DR+MVL NGQV      E + G
Sbjct: 298 VLIIAHRLSTIMD-CDRIMVLHNGQVVEMDTPEALMG 333


>SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)
          Length = 248

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = +1

Query: 454 INIPMLYVSHSLDEILHLADRVMVLENGQVK 546
           ++  +L ++H L+ +L  ADR+MV+E G+V+
Sbjct: 13  VDCTVLTIAHRLNTVL-TADRIMVMEAGKVR 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,839,110
Number of Sequences: 59808
Number of extensions: 501775
Number of successful extensions: 1131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)