Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0386.Seq
(852 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein. 34 0.57
AK131360-1|BAD18512.1| 1186|Homo sapiens mRNA. protein. 34 0.57
AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette tr... 34 0.57
BX640746-1|CAE45856.1| 431|Homo sapiens hypothetical protein pr... 31 4.0
BC125232-1|AAI25233.1| 1500|Homo sapiens ABCA6 protein protein. 31 4.0
BC125231-1|AAI25232.1| 1500|Homo sapiens ABCA6 protein protein. 31 4.0
AY028898-1|AAK30023.1| 1617|Homo sapiens ATP-binding cassette A6... 31 4.0
AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5... 31 4.0
AJ512612-1|CAD54757.1| 925|Homo sapiens ABCA5 transporter protein. 31 4.0
AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette pr... 31 4.0
AF373328-1|AAM77558.1| 1617|Homo sapiens ABC transporter ABCA6 p... 31 4.0
AF373290-1|AAM77557.1| 1617|Homo sapiens ABC transporter ABCA6 p... 31 4.0
U49248-1|AAB09422.1| 1545|Homo sapiens canalicular multispecific... 31 7.0
AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin receptor-i... 31 7.0
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i... 31 7.0
>AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein.
Length = 5058
Score = 34.3 bits (75), Expect = 0.57
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFG---ALEEVWGQ 579
+++ +H LDE L+DRV VL++G+++ G L+E +GQ
Sbjct: 4027 IIFTTHHLDEAEALSDRVAVLQHGRLRCCGPPFCLKEAYGQ 4067
>AK131360-1|BAD18512.1| 1186|Homo sapiens mRNA. protein.
Length = 1186
Score = 34.3 bits (75), Expect = 0.57
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFG---ALEEVWGQ 579
+++ +H LDE L+DRV VL++G+++ G L+E +GQ
Sbjct: 287 IIFTTHHLDEAEALSDRVAVLQHGRLRCCGPPFCLKEAYGQ 327
>AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette
transporter A13 protein.
Length = 2127
Score = 34.3 bits (75), Expect = 0.57
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFG---ALEEVWGQ 579
+++ +H LDE L+DRV VL++G+++ G L+E +GQ
Sbjct: 1095 IIFTTHHLDEAEALSDRVAVLQHGRLRCCGPPFCLKEAYGQ 1135
>BX640746-1|CAE45856.1| 431|Homo sapiens hypothetical protein
protein.
Length = 431
Score = 31.5 bits (68), Expect = 4.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
N+ R+ N ++ +H +DE LADR V+ G +K G+ L+ WG
Sbjct: 326 NLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWG 376
>BC125232-1|AAI25233.1| 1500|Homo sapiens ABCA6 protein protein.
Length = 1500
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
++ R + +L+ + S+DE LADR +++ NG++K G+ L+ WG
Sbjct: 655 SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWG 705
>BC125231-1|AAI25232.1| 1500|Homo sapiens ABCA6 protein protein.
Length = 1500
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
++ R + +L+ + S+DE LADR +++ NG++K G+ L+ WG
Sbjct: 655 SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWG 705
>AY028898-1|AAK30023.1| 1617|Homo sapiens ATP-binding cassette A6
protein.
Length = 1617
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
++ R + +L+ + S+DE LADR +++ NG++K G+ L+ WG
Sbjct: 655 SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWG 705
>AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5
protein.
Length = 1642
Score = 31.5 bits (68), Expect = 4.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
N+ R+ N ++ +H +DE LADR V+ G +K G+ L+ WG
Sbjct: 655 NLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWG 705
>AJ512612-1|CAD54757.1| 925|Homo sapiens ABCA5 transporter protein.
Length = 925
Score = 31.5 bits (68), Expect = 4.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
N+ R+ N ++ +H +DE LADR V+ G +K G+ L+ WG
Sbjct: 655 NLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWG 705
>AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette
protein protein.
Length = 1642
Score = 31.5 bits (68), Expect = 4.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
N+ R+ N ++ +H +DE LADR V+ G +K G+ L+ WG
Sbjct: 655 NLLKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWG 705
>AF373328-1|AAM77558.1| 1617|Homo sapiens ABC transporter ABCA6
protein.
Length = 1617
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
++ R + +L+ + S+DE LADR +++ NG++K G+ L+ WG
Sbjct: 655 SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWG 705
>AF373290-1|AAM77557.1| 1617|Homo sapiens ABC transporter ABCA6
protein.
Length = 1617
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGA---LEEVWG 576
++ R + +L+ + S+DE LADR +++ NG++K G+ L+ WG
Sbjct: 655 SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWG 705
>U49248-1|AAB09422.1| 1545|Homo sapiens canalicular multispecific
organic anion transporter protein.
Length = 1545
Score = 30.7 bits (66), Expect = 7.0
Identities = 13/35 (37%), Positives = 26/35 (74%)
Frame = +1
Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
++ ++H L I+ +D+VMVL+NG++ +G+ EE+
Sbjct: 1488 VITIAHRLHTIMD-SDKVMVLDNGKIIEYGSPEEL 1521
>AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin
receptor-interacting protein splice variant b protein.
Length = 1548
Score = 30.7 bits (66), Expect = 7.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 646 SSTVHFQNATLLLFRQPRIHHATAPTLLPARQ-RLSPDRFPVPSLCLPDGGSHP 488
+ST H Q + R P + A +P+LLPA + ++SP P LP G +P
Sbjct: 1365 TSTRHLQGVEFEM-RPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYP 1417
>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
interacting protein splice variant a protein.
Length = 2161
Score = 30.7 bits (66), Expect = 7.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 646 SSTVHFQNATLLLFRQPRIHHATAPTLLPARQ-RLSPDRFPVPSLCLPDGGSHP 488
+ST H Q + R P + A +P+LLPA + ++SP P LP G +P
Sbjct: 1978 TSTRHLQGVEFEM-RPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYP 2030
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,299,005
Number of Sequences: 237096
Number of extensions: 2439576
Number of successful extensions: 4457
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4457
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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