Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0386.Seq
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    33   0.26 
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    29   5.5  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    28   9.7  

>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
            C48B4.4c protein.
          Length = 1704

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 445  RREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
            R   N  ++  SHS+DE   L  R+ VL  G + A G+ +E+
Sbjct: 1549 REHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQEL 1590


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
            C48B4.4b protein.
          Length = 1691

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 445  RREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
            R   N  ++  SHS+DE   L  R+ VL  G + A G+ +E+
Sbjct: 1536 REHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQEL 1577


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
            C48B4.4a protein.
          Length = 1689

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 445  RREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
            R   N  ++  SHS+DE   L  R+ VL  G + A G+ +E+
Sbjct: 1534 REHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQEL 1575


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
            cassette transporter protein.
          Length = 1704

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 445  RREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
            R   N  ++  SHS+DE   L  R+ VL  G + A G+ +E+
Sbjct: 1549 REHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQEL 1590


>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 469 LYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ*RDES 594
           + ++H L  I H  D++MV+ NG++   G+ EE+    R+ S
Sbjct: 571 IIIAHRLSTIRH-CDKIMVMSNGKIAEVGSHEELISMDREYS 611


>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 469 LYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ*RDES 594
           + ++H L  I H  D++MV+ NG++   G+ EE+    R+ S
Sbjct: 571 IIIAHRLSTIRH-CDKIMVMSNGKIAEVGSHEELISMDREYS 611


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 445  RREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ 579
            R +    ++  SHS++E   L  R+ +L NG++ A G  + +  Q
Sbjct: 1299 REQAKCSIVLTSHSMEECEALCTRIGILRNGEMIALGTSQSLKSQ 1343


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 311 VRFDDQFVQRT*IIADILNQTVRVGQQVGKITRAGLF 421
           +RFD+   Q T  I + +N T R  Q VGK  R+ LF
Sbjct: 163 IRFDNNSSQSTSSIQNAVNGTPRKKQSVGKGRRSELF 199


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 433  NICAR-REINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
            NI  R R++   ++  SHS+DE   L   + ++  G+ + +G+ + +
Sbjct: 1621 NILNRLRDLGTALVLTSHSMDECEALCTELAIMVYGKFRCYGSCQHI 1667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,134
Number of Sequences: 27780
Number of extensions: 373262
Number of successful extensions: 868
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)