Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0386.Seq
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    31   0.74 
At2g41700.1 68415.m05151 ABC transporter family protein similar ...    31   0.74 
At1g31420.1 68414.m03848 leucine-rich repeat transmembrane prote...    29   3.0  
At5g61700.1 68418.m07741 ABC transporter family protein ABC fami...    29   3.9  
At5g21150.1 68418.m02526 PAZ domain-containing protein / piwi do...    29   5.2  
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    29   5.2  
At2g38720.1 68415.m04755 microtubule associated protein (MAP65/A...    29   5.2  
At3g47780.1 68416.m05205 ABC transporter family protein transpor...    28   9.1  

>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
           protein
          Length = 883

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -3

Query: 598 PRIHHATAPTLLPARQRLSP---DRFPVPSLC-LPDGGSHPANG 479
           P++H +  P L+P RQ LSP    + P+P     P   +HP+NG
Sbjct: 651 PQVHVSHFPNLMPYRQFLSPVYVPQMPMPGYSGNPAAYAHPSNG 694


>At2g41700.1 68415.m05151 ABC transporter family protein similar to
           ATP-binding cassette transporter ABCA1 GI:18031705 from
           [Arabidopsis thaliana]
          Length = 1822

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGA 558
           +L  +HS+DE   L DR+ ++ NG +K  G+
Sbjct: 669 ILLTTHSMDEAEELGDRIGIMANGSLKCCGS 699


>At1g31420.1 68414.m03848 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069:
           Eukaryotic protein kinase domain
          Length = 592

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 456 QHSDVVCQPFAG*DPPSGRQS-DGTGKRSGESLWRAGRSVGAV 581
           +H DVVCQ  +G +P S  QS     K SG+ L  A  +VGA+
Sbjct: 209 KHVDVVCQDDSG-NPSSHSQSGQNQKKNSGKLLISASATVGAL 250


>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
           transporter, Entamoeba histolytica, EMBL:EH058
          Length = 888

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 433 NICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
           N+  R + N  ++  +HS++E   L DR+ +  +G ++  G  +E+
Sbjct: 745 NVIKRAKQNTAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNSKEL 790


>At5g21150.1 68418.m02526 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}; contains Pfam
           profile: PF02170 PAZ (Piwi Argonaut and Zwille), PF02171
            Piwi domain
          Length = 896

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 300 PFTAFGLTISLSSARKSSLIFLIRPSEWASRSAKLPALASFLSTKYLRAAG 452
           PF    L   +   +K+ L+ + RP    S+  K+P L +    K+ + +G
Sbjct: 16  PFVPANLVPEVEPVKKNILLPMARPRGSGSKGQKIPLLTNHFGVKFNKPSG 66


>At3g62700.1 68416.m07043 glutathione-conjugate transporter,
           putative similar to glutathione-conjugate transporter
           AtMRP4 GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 466 MLYVSHSLDEILHLADRVMVLENGQVKAFGALEEV 570
           +L V+H +D  LH  DR++V+ +G +   G  +E+
Sbjct: 816 ILLVTHQVD-FLHNVDRILVMRDGMIVQSGKYDEL 849


>At2g38720.1 68415.m04755 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to myosin
           [Schistosoma japonicum] GI:3941320; contains Pfam
           profile PF03999: Microtubule associated protein
           (MAP65/ASE1 family)
          Length = 587

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 448 AARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK 317
           AARK  V+  E+  G+ +D+LA  DG I+   ++  +  +++ K
Sbjct: 333 AARKSLVELIESGDGDLSDILASIDGQIEKAREEALSRKEILDK 376


>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +1

Query: 436 ICARREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGQ 579
           +  R + N  ++  +HS++E   L DR+ +  +G ++  G  +E+ G+
Sbjct: 793 VIKRAKQNTAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNPKELKGR 840


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,414,348
Number of Sequences: 28952
Number of extensions: 353637
Number of successful extensions: 879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)