Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0385.Seq
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    31   0.27 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.63 
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    29   0.83 

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 378 YFVGFQN-SEVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLQ 253
           Y VG+ N + ++++   WGHS+ +V  E+L      H  + +Q
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQ 184


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
 Frame = -3

Query: 375 FVGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLQRCFHQSRTKFRGSK----- 211
           FV   + ++ ++++N GH   D+   +  SS+DE  RKH +    +S+ + R SK     
Sbjct: 74  FVPTSSVQLNVSKNN-GHKASDIVDAV--SSKDEELRKHAKGEGKRSKNRKRSSKHSEKQ 130

Query: 210 AIRYRPSSNRKYVI*RSADVTTMARRAASGKPKILDSGGEAKQ 82
           A+  + S++ +        V   + R+   K ++  +  E K+
Sbjct: 131 AVDLKSSNSSQETSSSKGSVNNKSERSREAKSRMPKNSKEIKK 173


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 175 CHLAIRRRYYNGSAGSFRETKDFGLRGGGKTNSLLASCDS 56
           CH+A+  +   G  GS  E KD      G+T SL+  CD+
Sbjct: 129 CHVAVDMKELAGKYGSLPEDKDLKFTPDGET-SLVYYCDN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,054
Number of Sequences: 5004
Number of extensions: 57746
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)