Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0385.Seq
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0186 + 13965960-13966424                                         28   8.1  
04_01_0352 - 4619946-4619984,4620062-4620133,4621515-4621880,462...    28   8.1  

>08_02_0186 + 13965960-13966424
          Length = 154

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 558 PTICSGKTCQYXPRMGAPXSGGP 626
           PTICSG+ CQ  P    P  G P
Sbjct: 46  PTICSGEGCQPPPGQPLPIYGYP 68


>04_01_0352 -
           4619946-4619984,4620062-4620133,4621515-4621880,
           4622240-4622713
          Length = 316

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 175 CHLAIRRRYYNGSAGSFRETKDFGLRGGGKTNSLLASCDS 56
           CH  +RRR Y  +A +  E  D    GGG+  SL AS  S
Sbjct: 25  CH-RLRRRRYVPAAAAASEDGDNSSNGGGEKRSLPASSAS 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,829
Number of Sequences: 37544
Number of extensions: 414192
Number of successful extensions: 1082
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)