Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0385.Seq
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   3e-11
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   8e-11
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   1e-10
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   3e-07
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   3e-07
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.22 
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   8.3  
SB_7223| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 32/42 (76%), Positives = 34/42 (80%)
 Frame = -1

Query: 302 VKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           VKFLD RKTN  ESIC+ VFINQER LE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 32/42 (76%), Positives = 33/42 (78%)
 Frame = -1

Query: 302 VKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           VKFLD RKTN  ESI K VFINQER LE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/42 (73%), Positives = 33/42 (78%)
 Frame = -1

Query: 302 VKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           VKFLD RKTN  ESIC+  FINQER LE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/42 (73%), Positives = 33/42 (78%)
 Frame = -1

Query: 302 VKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           VKFLD RKTN  ESIC+  FINQER LE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 27/41 (65%), Positives = 30/41 (73%)
 Frame = -1

Query: 299 KFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           + L  RKTN  ESIC+  FINQER LE RRR DT LVLT+N
Sbjct: 3   EILGFRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -1

Query: 302 VKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           VKFLD  +   +++  K VFINQER LE RRR DT LVLT+N
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -1

Query: 302 VKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           VKFLD  +   +++  K VFINQER LE RRR DT LVLT+N
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -1

Query: 302 VKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           VKFLD  +   +++  K VFINQER LE RRR DT LVLT+N
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = -1

Query: 305 EVKFLDRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           E+ ++  R+T  +++  K VFINQER LE RRR DT LVLT+N
Sbjct: 2   EISWIYERRTT-AKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = -1

Query: 290 DRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           +RR    +++  K VFINQER LE RRR DT LVLT+N
Sbjct: 25  ERRARTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = -1

Query: 290 DRRKTNISESICKGVFINQERNLEVRRRLDTALVLTVN 177
           +RR T  +++  K VFINQER LE RRR DT LVLT+N
Sbjct: 10  ERRTT--AKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -1

Query: 269 SESICKGVFINQERNLEVRRRLDT 198
           +++  K VFINQER LE RRR DT
Sbjct: 5   AKAFAKNVFINQERKLEDRRRSDT 28


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 55  KNRTTRADYLFCLPPGV-QNLWFPGSCPPSHCSNVGG 162
           +NR  +       P GV +N W PGS   S+C++ GG
Sbjct: 162 QNRKRKTSESRLSPYGVDENSWSPGSSQSSNCTSPGG 198


>SB_7223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 561 SVEPGVLKNAGSNIKIPMPVLFGEVSRW 478
           S E   +K  GSN K+ +PV  G   RW
Sbjct: 15  SAENWAIKYYGSNRKVGLPVTMGPTERW 42


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = -3

Query: 249 CFHQSRTKFRGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKILDSGGEAKQIVCS 70
           C  QS      SK  R+R  SN+K+    +      ++ A   K K  D     KQ+   
Sbjct: 193 CSSQSNAFSEKSKTRRHRKGSNKKHDGSHTESAKNASKMATKSKQKGQDFIKRNKQLAAD 252

Query: 69  RRAILCLSQKKKKK 28
              ++ +++++K +
Sbjct: 253 AANVIPMTEEEKSR 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,046,046
Number of Sequences: 59808
Number of extensions: 443959
Number of successful extensions: 1061
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)