Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0385.Seq
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41109-13|AAB37036.1|  264|Caenorhabditis elegans Posterior segr...    29   4.2  
AB006208-1|BAA33854.1|  264|Caenorhabditis elegans cytoplasmic z...    29   4.2  
U13643-1|AAA21083.1|  427|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormo...    28   9.6  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
            H03E18.1 protein.
          Length = 1147

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/84 (27%), Positives = 36/84 (42%)
 Frame = -1

Query: 626  WPPAXRCTHPRXILTRFAGAYRRLNPAF*KTPVQISKSLCRCSSVKCRGGPTILL*TN*S 447
            +PPA RC++     T F G  R L     KTP   +     C +++CR    I      S
Sbjct: 1057 YPPAGRCSYSALYQTSFLGR-RLLKAVRVKTP---ADCFAACYALRCRSANLIAQGEFNS 1112

Query: 446  AQSGLKMLLEYFVHGIIEYDLGSI 375
             +     L++Y    +I YD  ++
Sbjct: 1113 CELYRDSLIDYRRPDMIGYDASTV 1136


>U41109-13|AAB37036.1|  264|Caenorhabditis elegans Posterior
           segregation protein 1 protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 428 FLARFEHSNLFKVKLSAHLDTSPKSTGIGILIFEPAFFRTPGSTDDM--LRQNVSVXTAD 601
           F+ +    N  K+   AH +TS KS          + F   GSTD    L Q++ +  +D
Sbjct: 164 FIHKIVDGNAAKLASGAHANTSSKSPARNAAAHNHSLFVPQGSTDRSMDLNQSLPIRQSD 223

Query: 602 GCTGXRGATKLQLPXF 649
                  AT+L +  +
Sbjct: 224 LVRAFARATRLDVSGY 239


>AB006208-1|BAA33854.1|  264|Caenorhabditis elegans cytoplasmic
           zinc-finger protein protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 428 FLARFEHSNLFKVKLSAHLDTSPKSTGIGILIFEPAFFRTPGSTDDM--LRQNVSVXTAD 601
           F+ +    N  K+   AH +TS KS          + F   GSTD    L Q++ +  +D
Sbjct: 164 FIHKIVDGNAAKLASGAHANTSSKSPARNAAAHNHSLFVPQGSTDRSMDLNQSLPIRQSD 223

Query: 602 GCTGXRGATKLQLPXF 649
                  AT+L +  +
Sbjct: 224 LVRAFARATRLDVSGY 239


>U13643-1|AAA21083.1|  427|Caenorhabditis elegans Hypothetical
           protein T07E3.4a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 133 GSFRETKDFGLRGGGKTNSLLASCDSLFITKKKKKNTRLVLS 8
           GSF ETK   ++  GK N L +  + LF     KKN   V S
Sbjct: 24  GSFLETKYRKVKKDGKKNGLKSIAEWLFTKTSAKKNGAPVTS 65


>AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 125 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 51  NKESHDASRLFVLPPPRSPKSLVSR 125
           N++S  A+  F LPPPRS  S V R
Sbjct: 81  NRDSFRATGQFQLPPPRSLASFVGR 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,282,051
Number of Sequences: 27780
Number of extensions: 349837
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)