Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0385.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38320.1 68418.m04625 expressed protein  ; expression support...    31   1.3  
At5g28290.1 68418.m03434 protein kinase, putative similar to LST...    30   2.2  
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    28   6.8  

>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 250 PLQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 426
           P++M  +   + RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 73  PIEMKKIPEPIYRSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At5g28290.1 68418.m03434 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 568

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -3

Query: 126 SGKPKILDSGGEAKQIVCSRRAILCLSQKKKKKTRD 19
           S +PK   SGG  K  V +RRA L +SQK  K T+D
Sbjct: 362 SNQPK---SGGLLKPAVVTRRASLPISQKPAKGTKD 394


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -1

Query: 224 LEVRRRLDT----ALVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGGRQ 87
           +EVR+RL+     +L+   N  + +   LL  LGG++  NQ    PG RQ
Sbjct: 511 VEVRQRLNVLAEKSLISFSNWGTIEMHKLLAKLGGEIVRNQSIHEPGQRQ 560


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,361
Number of Sequences: 28952
Number of extensions: 319464
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)