Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0384.Seq
         (846 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XRZ1 Cluster: Putative uncharacterized protein; n=4; ...    36   0.97 
UniRef50_A0V185 Cluster: Putative uncharacterized protein precur...    34   5.2  
UniRef50_Q3S2A7 Cluster: NADH dehydrogenase subunit 6; n=1; Thal...    34   5.2  
UniRef50_A4CAZ6 Cluster: GGDEF domain protein; n=1; Pseudoaltero...    33   9.0  

>UniRef50_Q4XRZ1 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 895

 Score = 36.3 bits (80), Expect = 0.97
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
 Frame = -3

Query: 367 LKIGKNHEKNNLSYLNGVNLIKMNLIDK-DKFRVFNEMSFHPSNIFFYLDQYRTV*GKNL 191
           +KI KN++  + SY NG N + +N+    +K+ +F+  ++    I  +L+ Y      NL
Sbjct: 453 VKIKKNYKLPDCSYKNGTNSMNINISSMLEKYPLFSSFNY----ILAFLNNYLDSNKFNL 508

Query: 190 YYF-ILPTSLEHVCGTIPAFIYHIY*LIQ*KHFNF--RCTFKRNFLEN-ETRMTERSF 29
             F ++   LE +  +    +YH+  +I   H NF  +  +  N L N +T++  +S+
Sbjct: 509 NSFLVIIFYLEKIIPSSLVHLYHLESMIYKNHQNFINKYFYIFNGLNNSQTKILNKSY 566


>UniRef50_A0V185 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium cellulolyticum H10|Rep:
           Putative uncharacterized protein precursor - Clostridium
           cellulolyticum H10
          Length = 854

 Score = 33.9 bits (74), Expect = 5.2
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = -3

Query: 340 NNLSYLNGVNLIKMNLIDKDKFRVFNEMSF-----HPSNIFFYLDQYRTV*G 200
           +N  Y +G++++K   +  + FRV++++       +P N+F+  D+YR   G
Sbjct: 489 DNKMYFSGISVLKSGSLPAEAFRVWDDIEIPSKEVYPGNVFYLYDKYRDTNG 540


>UniRef50_Q3S2A7 Cluster: NADH dehydrogenase subunit 6; n=1;
           Thalassiosira pseudonana|Rep: NADH dehydrogenase subunit
           6 - Thalassiosira pseudonana (Marine diatom)
          Length = 201

 Score = 33.9 bits (74), Expect = 5.2
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 655 MIINVYLYFKSFYLL*NSLRHLKKNNPIHFILVLHIPFLHS 533
           MI+N++ YF SF L+ +SL  +   N I+ +L L + F+ S
Sbjct: 1   MIVNLFFYFFSFVLITSSLMTVFSQNSIYSVLFLVLSFVSS 41


>UniRef50_A4CAZ6 Cluster: GGDEF domain protein; n=1;
           Pseudoalteromonas tunicata D2|Rep: GGDEF domain protein
           - Pseudoalteromonas tunicata D2
          Length = 293

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -3

Query: 631 FKSFYLL*NSLRHLKKNNPIHFILVLHIPF-LHSILT*HVNELI 503
           F +F L+ ++L  LK NN IHFIL+    F L S+L   +NE++
Sbjct: 42  FITFLLIFHNLSELKSNNTIHFILLAGFSFILVSMLMDTLNEVL 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,643,317
Number of Sequences: 1657284
Number of extensions: 12866359
Number of successful extensions: 23808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23803
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)