Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0384.Seq
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.67 

>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 480 LTWVLNNRISSLTCQVRIECKKGMCKTNMKCIGLFFFK 593
           +TW +   I ++  +VR  CKKG+  TN K +  F  K
Sbjct: 34  VTWTVRKYIEAIRKEVRTYCKKGLGATNAKAVMAFHTK 71


>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 480 LTWVLNNRISSLTCQVRIECKKGMCKTNMKCIG 578
           +TW +   I ++  +VR  CKKG+  TN K +G
Sbjct: 330 VTWTVRKYIEAIRKEVRTYCKKGLGATNAKGMG 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,284,542
Number of Sequences: 59808
Number of extensions: 395009
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)