Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0384.Seq
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036696-3|ABB51190.1|  292|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF036696-2|AAB88349.1|  324|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF016674-7|AAB66126.2|  415|Caenorhabditis elegans C-type lectin...    28   9.6  

>AF036696-3|ABB51190.1|  292|Caenorhabditis elegans Hypothetical
           protein F15B10.1b protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 429 SIWSDM-ASCIF*FGIQLLTWVLNNRISSLTCQVRIECKK 545
           S+W D+ ASC+  +G     + LN+R+ SLT  + +  +K
Sbjct: 202 SLWVDLIASCLLQYGCIKYVYQLNSRVDSLTVTLVVTLRK 241


>AF036696-2|AAB88349.1|  324|Caenorhabditis elegans Hypothetical
           protein F15B10.1a protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 429 SIWSDM-ASCIF*FGIQLLTWVLNNRISSLTCQVRIECKK 545
           S+W D+ ASC+  +G     + LN+R+ SLT  + +  +K
Sbjct: 234 SLWVDLIASCLLQYGCIKYVYQLNSRVDSLTVTLVVTLRK 273


>Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.11 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 645 MFIYILNLFIYSKIP*GI*KKTIQYISYWFYTFPF 541
           MFIY   +F    I   +  +   +I  WFYT PF
Sbjct: 249 MFIYSFGIFTLKTIRSMLTYRQYYFIVVWFYTIPF 283


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 289 DKDKFRVFNEMSFHPSNIFFYLDQYRTV*GKNLYYFILPTSLEHVCGTIPAFI 131
           + DK R + E ++H      Y+D+  T     L Y I   + E VCG    F+
Sbjct: 264 ESDKARFWEEFAYHYPGSGVYMDRVST--DGRLKYLIDNCTSEFVCGDTDTFV 314


>Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK218.6 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 489 VLNNRISSLTCQVRIECKKGMCKTNMKCIGLFFFKCLK 602
           +LN R  ++ C    EC+ G+ KT   C G  F KCLK
Sbjct: 51  LLNKR--NIRCSKNPECEIGI-KTRYACQGCRFKKCLK 85


>AF016674-7|AAB66126.2|  415|Caenorhabditis elegans C-type lectin
           protein 10 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 477 LLTWVLNNRISSLTCQVRIECKKGMCKTNMKCIGLFF 587
           LL W+ N  ISS T      CK G    N KC+ LF+
Sbjct: 8   LLIWLANVAISSNTPV----CKNGFTLINNKCLRLFY 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,571
Number of Sequences: 27780
Number of extensions: 330865
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)