Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0382.Seq
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    28   1.3  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    28   1.8  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    26   5.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   7.1  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   7.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   7.1  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   9.4  

>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 99  PFCAIMETLIRNNGKVVSKDSLMLQLYPDAECGKAIPLMY 218
           PFC IM  ++    K+V   S++L L+  A CG A  +++
Sbjct: 143 PFCGIMSEVVGR--KIVLYTSIVLFLFGSAMCGAAQNMLW 180


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 99  PFCAIMETLIRNNGKVVSKDSLMLQLYPDAECGKAIPLMY 218
           PFC IM  ++    K+V   S++L L+  A CG A  +++
Sbjct: 143 PFCGIMSEVVGR--KIVLYTSIVLFLFGSAMCGAAQNMLW 180


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 78  PSGLTPRPFCAIMETLIRNNGKVVSKDSLMLQL 176
           P  L P P   I+E  +  NGKVV KDS  L L
Sbjct: 127 PKHLIPDPHNVILELSL--NGKVVQKDSTSLML 157


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 8/36 (22%)
 Frame = -1

Query: 160 ESLLTTLPLLRIN--------VSIIAQKGLGVSPLG 77
           E ++T +P++R N        V II QKG+ + PLG
Sbjct: 65  EEIMTFIPVIRRNLLESAKTLVKIIVQKGINLDPLG 100


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 426  GYSVSFDKTTFRLLRGESNLFYTLAK 503
            G  V FD T  +LL  +++LFY+LAK
Sbjct: 1434 GKVVEFDSTK-KLLENKASLFYSLAK 1458


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 443 ETDAITDQRDHSVGKRKHQYYRCRCQQKTYPQREREKKTQ 324
           E D +TD++    G+R  Q +  R  ++   Q  REK  Q
Sbjct: 527 ELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQ 566


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 262 LGELCLNFFAQTS-HQYINGMAFPHSASG*S--WSINESLLTTLPLLRINVSIIAQKGLG 92
           LGEL + F    S H Y  G  F H + G +  W+   S L T PL  I  SI  Q  + 
Sbjct: 135 LGELAVAFPINGSFHTY--GTRFIHPSWGFTLGWNYLASFLATYPLELITASICLQFWIN 192

Query: 91  VS 86
           ++
Sbjct: 193 IN 194


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 420 ARPFRRQAKAPVLPLPLPTENVPAARAGKKDAVIFSS 310
           A PF  + + P+  LPLP  N   +R+ +  + I  S
Sbjct: 492 ADPFAYEIEKPIASLPLPNGNDTISRSSESSSPINES 528


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 512 NKLHVELPENIDKQSPTMTLIYDENGQLL 598
           +KL+ +L  N+D   P   L   ENG LL
Sbjct: 609 HKLYAQLTSNVDAIPPANDLQNQENGLLL 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,164
Number of Sequences: 5004
Number of extensions: 72168
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)