Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0382.Seq
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0044 - 10559637-10560509,10562849-10563295 33 0.20
05_03_0616 - 16227467-16228321 30 2.4
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 30 2.4
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 4.2
11_06_0198 - 21158350-21159528 29 5.6
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 28 7.4
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 9.7
02_05_1175 - 34706870-34707616 28 9.7
02_05_0002 - 24849189-24849825,24850267-24850328 28 9.7
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 28 9.7
>01_02_0044 - 10559637-10560509,10562849-10563295
Length = 439
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 402 QAKAPVLPLPLPTENVPAARAGKKDAVIFSSAQFEQIALAANGGNHFLGNC 250
QA+ L LP PT V ++ +A + A NGGN F GNC
Sbjct: 260 QARTRALRLPEPTSRVNLCFFANTRHLMAGAAAWPAPAAGGNGGNGFYGNC 310
>05_03_0616 - 16227467-16228321
Length = 284
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 164 NAPTLSGCGVRESH-TIDVLMGRLRKKIQAQFPKK*LPPFAARAI 295
N P C +R++ ++D L+GRLR + + PFAARA+
Sbjct: 127 NPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAV 171
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 208 GMAFPHSASG*SWSINESLLTTLPLLRINVSIIAQKGLGVSPLGAS 71
G+ P+ A+G S+ E ++ L + + GLGVSP GAS
Sbjct: 443 GLGLPYDATGGPVSLPELMMGQSTLFSAKPATLDFLGLGVSPTGAS 488
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 420 ARPFRRQA-KAPVLPLPLPTENV 355
ARP +RQA KAPV P P P E+V
Sbjct: 97 ARPAQRQARKAPVKPAPPPPEHV 119
>11_06_0198 - 21158350-21159528
Length = 392
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 464 QPKRSFIETDAITDQRDHSVGKRKHQYYRCRCQQKTYPQREREKKTQ 324
Q +R E A+ ++ DH+ G + Q+ R RCQ + Q +R++ Q
Sbjct: 278 QWRRQEEEEAAVDEEEDHNYGGEREQHCRKRCQHH-HDQWKRQQCMQ 323
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 482 SVLYPCEVGNNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWL 625
S+L+PC+V + VELP I S +YD + + LW D ++
Sbjct: 106 SLLHPCKVAFLRKGVELPAGI--SSFVCRRVYDIDNKCLWWLTDQDYI 151
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 75 PPSVQILVVVANTPARPW 22
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>02_05_1175 - 34706870-34707616
Length = 248
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 164 NAPTLSGCGVRESH-TIDVLMGRLRKKIQAQFPKK*LPPFAARAI 295
N P C +R++ ++D L+GRLR + + PF ARA+
Sbjct: 140 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAV 184
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 164 NAPTLSGCGVRESH-TIDVLMGRLRKKIQAQFPKK*LPPFAARAI 295
N P C +R++ ++D L+GRLR + + PFA RA+
Sbjct: 133 NPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAV 177
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +2
Query: 476 EQSVLYPCEVGNNKLH---VELPENIDKQSPTMTLIYDENGQLLWA-QRDV-PWLMKMIQ 640
E VL+PC +G K H V L + +D++ DE +LL A + +V P M++
Sbjct: 292 EIPVLFPCYIGVYKFHAFPVSLEQVLDREDT------DEEQRLLAALEIEVKPMAMQIDY 345
Query: 641 PDWLKSIGF-HEI 676
P+W + + HE+
Sbjct: 346 PEWATAFSWGHEV 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,404,591
Number of Sequences: 37544
Number of extensions: 533712
Number of successful extensions: 1792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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