Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0382.Seq
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U53148-6|AAB37075.1|  186|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF303248-1|AAG50206.1|  186|Caenorhabditis elegans 5I259 protein.      29   5.0  
M77697-5|AAA27893.3|  239|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 14  SVLQGLAGVFATTTKICTDGGSKRAHAQTLLRYY 115
           SVLQ    VF + T IC    + RAH +  L YY
Sbjct: 526 SVLQSSCYVFHSVTSICFRSQAGRAHRERCLEYY 559


>Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical
           protein C36E8.3 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 521 HVELPENIDKQSPTMTLIYDENGQLLWAQRDVPW 622
           +V+L E+ D+ S T   I  +NG +++  +DVP+
Sbjct: 225 NVQLKEDKDEHSFTFQTILHKNGDIVFIYKDVPY 258


>U53148-6|AAB37075.1|  186|Caenorhabditis elegans Hypothetical
           protein C26F1.3 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 405 RQAKAPVLPLPLPTENVPAARAGKKDAVIFSSAQFEQIALAA 280
           R+ K  ++ +  P   +P  +  +KD  +FS A F Q+A  A
Sbjct: 133 RKEKKAIIGVKEPRRLLPGQKKKQKDKSVFSDADFAQVAHVA 174


>AF303248-1|AAG50206.1|  186|Caenorhabditis elegans 5I259 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 405 RQAKAPVLPLPLPTENVPAARAGKKDAVIFSSAQFEQIALAA 280
           R+ K  ++ +  P   +P  +  +KD  +FS A F Q+A  A
Sbjct: 133 RKEKKAIIGVKEPRRLLPGQKKKQKDKSVFSDADFAQVAHVA 174


>M77697-5|AAA27893.3|  239|Caenorhabditis elegans Hypothetical
           protein B0303.8 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 126 IRNNG----KVVSKDSLMLQLYPDAECGKAIPLMY*WDVCAKKFRHNSPRSDYHRSRPGL 293
           ++NNG    KV+  D ++L +     C       Y   +C ++ R  +P+SD   S PG 
Sbjct: 94  LKNNGLWDSKVIDTDKVILSVRSTFYCENG----YFGPICDRRSRTFAPKSDIQTSTPGY 149

Query: 294 SVRI 305
             ++
Sbjct: 150 QTQV 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,094,764
Number of Sequences: 27780
Number of extensions: 422829
Number of successful extensions: 1126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)