Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0382.Seq
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 749 FLQLLLYRMISHSAKRVXIVNIRFQ 675
           F  LL Y  + + AKR+ +   RFQ
Sbjct: 295 FASLLEYATVGYMAKRIQMRKNRFQ 319


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 749 FLQLLLYRMISHSAKRVXIVNIRFQ 675
           F  LL Y  + + AKR+ +   RFQ
Sbjct: 295 FASLLEYATVGYMAKRIQMRKNRFQ 319


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 146 GQQRFVNAPTLSGCGVRESHTIDVL 220
           G  RF+     S  G+RE HT++++
Sbjct: 131 GASRFLELAPDSFLGLRELHTLEIV 155


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 749 FLQLLLYRMISHSAKRVXIVNIRFQ 675
           F  LL Y  + + AKR+ +   RFQ
Sbjct: 234 FASLLEYATVGYMAKRIQMRKNRFQ 258


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +2

Query: 491  YPCEV----GNNKLHVELPENIDKQSPTMTLIYDENGQLL 598
            Y C+V    GN+KLH  L   +   +P + +    +  +L
Sbjct: 1382 YTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSIL 1421


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +2

Query: 491  YPCEV----GNNKLHVELPENIDKQSPTMTLIYDENGQLL 598
            Y C+V    GN+KLH  L   +   +P + +    +  +L
Sbjct: 1378 YTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSIL 1417


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -3

Query: 401 KRKHQYYRCRCQQKTYPQREREKKTQ 324
           +RK++ YR R ++++  + ERE+  +
Sbjct: 53  ERKYRKYRERSKERSRDRTERERSRE 78


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -3

Query: 401 KRKHQYYRCRCQQKTYPQREREKKTQ 324
           +RK++ YR R ++++  + ERE+  +
Sbjct: 53  ERKYRKYRERSKERSRDRTERERSRE 78


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 478 AICSIPLRSGKQ*VACRVTRKYRQAKPHHDAN 573
           ++CS P    K+     V ++  QA P +D N
Sbjct: 603 SVCSSPRSEDKEVEDMPVLKRVLQAPPLYDTN 634


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 573 ISVMVGLCLSIFSGNSTCNLLFPTSQGYRTDCSRHVTA 460
           +++++G+ L  +    TCN++         DC   VTA
Sbjct: 621 LAIVLGVFLICWLPFFTCNIMDAICTKLTADCQPGVTA 658


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,038
Number of Sequences: 438
Number of extensions: 5443
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)