Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0382.Seq
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04110.1 68414.m00400 subtilase family protein contains simil...    30   1.5  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    29   2.7  
At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family pr...    29   3.5  
At1g56660.1 68414.m06516 expressed protein                             29   4.6  

>At1g04110.1 68414.m00400 subtilase family protein contains
           similarity to subtilisin-like protease GI:3687307 from
           [Lycopersicon esculentum]
          Length = 775

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 87  LTPRPF--CAIMETLIRNNGKVVSKDSLMLQLYPDAECGKAIPLMY*W 224
           + P+PF  C I      ++ +++ K + ++QL+P++E  K     + W
Sbjct: 1   MEPKPFFLCIIFLLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFDW 48


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 164 NAPTLSGCGVRESH-TIDVLMGRLRKKIQAQFPKK*LPPFAARAI 295
           N P    C +R++  ++D L+GRLR   +    K    PF ARA+
Sbjct: 114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAV 158


>At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 378

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +2

Query: 545 DKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSIGFH 670
           D  +P ++L+YD NG++      V  +   + P+W++   ++
Sbjct: 84  DISTPIVSLVYDTNGEVAAGVAGVDAVENFLTPEWIQRFEYN 125


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 464 QPKRSFIETDAITDQRDHSVGKRKHQYYRCRCQQKTYPQREREKKTQ 324
           + K+   ETD    ++D    K+K +   C  ++K  P +E+++K +
Sbjct: 230 EKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKKEKDE 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,092
Number of Sequences: 28952
Number of extensions: 399559
Number of successful extensions: 1068
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)