Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0379.Seq
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25940.1 68415.m03113 vacuolar processing enzyme alpha / alph...    28   3.7  
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    27   6.4  
At1g80210.1 68414.m09387 expressed protein                             27   8.5  

>At2g25940.1 68415.m03113 vacuolar processing enzyme alpha /
           alpha-VPE identical to SP|P49047 Vacuolar processing
           enzyme, alpha-isozyme precursor (EC 3.4.22.-)
           (Alpha-VPE) {Arabidopsis thaliana}
          Length = 478

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 199 NSRGGPVPNSPYXESYYNSWPSFYNVVTGXTLAXPNLIAL 318
           N R G + NSP  E  YN  P  Y   TG  +   NL+A+
Sbjct: 95  NPRPGVIINSPNGEDVYNGVPKDY---TGDEVNVDNLLAV 131


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 GPVPNSPYXESYYNSWPSFYN 273
           G VPN     SY+NS+P  YN
Sbjct: 220 GVVPNRSSANSYFNSFPPGYN 240


>At1g80210.1 68414.m09387 expressed protein
          Length = 354

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 343 QLAKGGCAARRLSWXTPGXSQSXRCKTTARNCNTTXYRANWVPGPPSS 200
           + +K G +A  + W     S+S R K    + N   Y  +W+   PSS
Sbjct: 30  EYSKDGGSATAMIWGASPQSRSDRQKDRNDDINGQNYTGHWMVPLPSS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,523,032
Number of Sequences: 28952
Number of extensions: 115547
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)