Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0378.Seq
         (934 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62136 Cluster: Serine/threonine-protein phosphatase PP...    48   5e-04
UniRef50_P62140 Cluster: Serine/threonine-protein phosphatase PP...    46   0.001
UniRef50_A3B8P6 Cluster: Putative uncharacterized protein; n=1; ...    42   0.022
UniRef50_A2WKL3 Cluster: Putative uncharacterized protein; n=2; ...    34   5.9  
UniRef50_Q24FD4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_P62136 Cluster: Serine/threonine-protein phosphatase
           PP1-alpha catalytic subunit; n=337; root|Rep:
           Serine/threonine-protein phosphatase PP1-alpha catalytic
           subunit - Homo sapiens (Human)
          Length = 330

 Score = 47.6 bits (108), Expect = 5e-04
 Identities = 28/42 (66%), Positives = 28/42 (66%), Gaps = 5/42 (11%)
 Frame = +3

Query: 3   LMCSFQILKPADKRKCD----SGLNM-GRPNTPPRAQPKNKK 113
           LMCSFQILKPADK K      SGLN  GRP TPPR   K KK
Sbjct: 289 LMCSFQILKPADKNKGKYGQFSGLNPGGRPITPPRNSAKAKK 330


>UniRef50_P62140 Cluster: Serine/threonine-protein phosphatase
           PP1-beta catalytic subunit; n=51; cellular
           organisms|Rep: Serine/threonine-protein phosphatase
           PP1-beta catalytic subunit - Homo sapiens (Human)
          Length = 327

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
 Frame = +3

Query: 3   LMCSFQILKPADKR-KCD-SGLNMGRPNTPPR-AQPKNKK 113
           LMCSFQILKP++K+ K    GLN GRP TPPR A P  K+
Sbjct: 288 LMCSFQILKPSEKKAKYQYGGLNSGRPVTPPRTANPPKKR 327


>UniRef50_A3B8P6 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 177

 Score = 41.9 bits (94), Expect = 0.022
 Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3   LMCSFQILKPADKR-KCDSGLNMGRPNTPPR 92
           L CSFQILKP+DK+ K  +G NM +P TPPR
Sbjct: 141 LTCSFQILKPSDKKGKAGTG-NMSKPGTPPR 170


>UniRef50_A2WKL3 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 229

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +2

Query: 2   ADVLVPDPEAGRQAQV*LGPQHGPPQHAAARTAQEQEELMAPHARRP 142
           AD +  DP  G + Q   GP+HGPPQ AAA  A           RRP
Sbjct: 45  ADGVAADPGDGSEWQDG-GPEHGPPQRAAAAAAAAVTGRFGQPERRP 90


>UniRef50_Q24FD4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 209

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   LMCSFQILKPADKRKCDSGLNMGRPNTPPRA 95
           LMCSFQILKPADK+         RP TP ++
Sbjct: 111 LMCSFQILKPADKKS-----QTQRPKTPKQS 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,684,925
Number of Sequences: 1657284
Number of extensions: 14053553
Number of successful extensions: 34568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34517
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85324527343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)