Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0378.Seq
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    34   0.033
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    31   0.18 
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   3.8  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    27   5.0  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    26   8.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   8.7  

>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 3   LMCSFQILKPADKRKCDSGLNMGRPNTPPRAQPKNKKN 116
           L+CSFQILKPA+KR+  S  ++    +   +  K+K N
Sbjct: 285 LLCSFQILKPAEKRQRVSQSSIKESKSATNSLKKSKNN 322


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 3   LMCSFQILKPADK--RKCDSGLNMGRPNTPPRAQPKNK 110
           L+CSFQILKPA+K  R    G +     TPPR   KNK
Sbjct: 288 LLCSFQILKPAEKKQRYGYQGSSQNWHMTPPR---KNK 322


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 278 LWEVAGLSTLTLMHSIKETKIH*NINPFKVF*VYSGEGGVSMRVSADGARVGPLI 114
           LWE+ GLS  TL       ++    N F++  V    GGV      D  +VG ++
Sbjct: 220 LWEIPGLSHKTLREYSLSNRVDTCRNQFRIS-VRRVAGGVVSNFVHDNLKVGDIV 273


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 859 WRFRXLXPPXQNKFKANFXRFVSFFXGNXFPEFGVN 752
           W+   + P  Q    A+F RFV F   N  P  G+N
Sbjct: 71  WKNFHMRPDDQLAITASFGRFVPFKILNQLPYGGIN 106


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 491 KRIF-NTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLLDIV*TQXLPVFXFSSLW 315
           KR++ NT+ ++    R   +   L+A +   C YH +N  +      T  L  F F S W
Sbjct: 39  KRVYSNTNEVNGLQGRTFGIWTLLSAIVRFYCAYHITNPDVYFLCQCTYYLACFHFLSEW 98


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 20  DPEAGRQAQV*LGPQHGPPQHAAARTAQEQEELMAPHARRPP 145
           D   G    V +G +   P  +     Q+ EE++ PHA+R P
Sbjct: 211 DKRLGNTISV-IGKKFALPAGSEREDYQKYEEIIVPHAQRAP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,680
Number of Sequences: 5004
Number of extensions: 55106
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)