Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0378.Seq
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143           42   7e-04
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     31   1.7  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    30   3.0  
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283...    28   9.2  
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620...    28   9.2  

>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
          Length = 339

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3   LMCSFQILKPADKR-KCDSGLNMGRPNTPPR 92
           L CSFQILKP+DK+ K  +G NM +P TPPR
Sbjct: 303 LTCSFQILKPSDKKGKAGTG-NMSKPGTPPR 332


>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 461 SESERPDSLSETLNAFLTENCNYHYSNVSLLLD 363
           S SE+P S+  T++A L +  N H S+V + +D
Sbjct: 545 SRSEKPASIGSTIDAVLLQEGNTHTSDVEMSMD 577


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
 Frame = -2

Query: 189 ILSVQR*GRGVHACVGGRRACGAINSSCSWAVRAAAC----WGGPC*GPSHTCACRPASG 22
           ++SV R     H+    +     I  SC W VRA       W     G  HTC    ASG
Sbjct: 629 LISVHRPFHVKHSNASKKYTVACIEESCEWQVRARKTKDGRWRVTGVGKEHTCCSAEASG 688


>02_05_1246 -
           35226759-35226860,35227521-35227715,35227804-35228363,
           35229299-35229476
          Length = 344

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 3   LMCSFQILKPADK 41
           LMCSFQILKPA K
Sbjct: 286 LMCSFQILKPARK 298


>01_07_0248 +
           42261373-42261609,42261733-42261905,42261986-42262058,
           42262148-42262282,42262352-42262562,42262886-42263034,
           42263169-42263267,42263821-42263989,42264176-42264308,
           42264600-42264694,42264774-42264882,42265136-42265295,
           42265433-42265594,42265814-42265985,42266254-42266402,
           42266914-42266951,42267779-42267839,42267913-42268155,
           42268233-42268315,42269521-42269609,42270449-42270495,
           42270576-42270656,42270737-42270899,42271077-42271267,
           42271691-42271762
          Length = 1097

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 166 EGCPCVCRRTARVWGH*FFLFLGCARGGVLGRPMLRPES 50
           +G  C C     VWG   F FL CA  G + +    PES
Sbjct: 854 QGQSCECTLPLSVWGCFRFGFLFCAIDGAVKKASPAPES 892


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,415,993
Number of Sequences: 37544
Number of extensions: 416780
Number of successful extensions: 1069
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)