Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0378.Seq
         (934 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)       54   2e-07
SB_19115| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   6e-06
SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   6e-06
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)                     30   3.1  
SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10)                 29   4.1  
SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  

>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 26/38 (68%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   LMCSFQILKPADKRKCD-SGLNMGRPNTPPRAQPKNKK 113
           LMCSFQILKPADK+K    GLN GRP TPPR Q +  K
Sbjct: 254 LMCSFQILKPADKKKFPYGGLNSGRPVTPPRGQQQKAK 291


>SB_19115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   LMCSFQILKPADKR-KCD-SGLNMGRPNTPPRAQPKNKK 113
           LMCSFQILKP++K+ K    GLN GRP TPPR  P+NKK
Sbjct: 79  LMCSFQILKPSEKKAKYQYGGLNSGRPVTPPRG-PQNKK 116


>SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   LMCSFQILKPADKR-KCD-SGLNMGRPNTPPRAQPKNKK 113
           LMCSFQILKP++K+ K    GLN GRP TPPR  P+NKK
Sbjct: 162 LMCSFQILKPSEKKAKYQYGGLNSGRPVTPPRG-PQNKK 199


>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 532

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = -2

Query: 168 GRGVHACVGGRRACGAINSSCSWAVRAAACWGGPC*GPSH 49
           G G+  C G        N    W +R A  WG P  G  H
Sbjct: 248 GMGMGGCQGDSGGPFVCNEGGRWVLRGAVSWGQPMCGTDH 287


>SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10)
          Length = 171

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 96  VRAAACWGGPC*GPSHTCACRPASGSGTSTSA 1
           ++ AAC G PC     T  C PA G  +S  A
Sbjct: 93  IKNAACGGSPCGALRQTKRCNPAHGGWSSWGA 124


>SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -1

Query: 325 RVYGLVSRTFRPTARLYGRL-LGCQL*RSCI-QLRKQRFTKTSTRSRYFKCTAVREGCPC 152
           +++ +  R  RP   ++ +L    Q+ RSC  Q  + +  KTS+ S+  K   V+     
Sbjct: 17  KLFHIAWRNTRPFRMIHTKLDFRIQIRRSCFKQNGRHQSEKTSSGSKIVKYKTVKANTAI 76

Query: 151 VCRRTARVW 125
            C  TAR W
Sbjct: 77  RCVLTARSW 85


>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 5   DVLVPDPEAGRQAQ--V*LGPQHGPPQHAAARTAQEQEELMAPHARRPPTH 151
           D +  DP  G ++   V +G +H PP +       ++++L+  H R PP +
Sbjct: 128 DHMQGDPSRGSESPRGVTMGYRHPPPYNEIVGKQNKKDKLVLDHYRHPPPY 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,038,629
Number of Sequences: 59808
Number of extensions: 453111
Number of successful extensions: 953
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)