Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0378.Seq
         (934 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.18 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 53  LGPQHGPPQHAAARTAQEQEELMAPHARRPPT 148
           +GP  GPP H      Q  + L   H R+PPT
Sbjct: 343 MGPTMGPPHHHHHHQTQSLQHL---HYRQPPT 371


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 62   QHGPPQHAAARTAQEQEELMAPHARRP 142
            QH PP ++    +  Q++ + P + +P
Sbjct: 1266 QHAPPAYSCGTVSVPQQQQLPPSSPQP 1292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,529
Number of Sequences: 438
Number of extensions: 3859
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)