Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0378.Seq
         (934 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP...    34   0.12 
At4g11240.1 68417.m01820 serine/threonine protein phosphatase PP...    32   0.47 
At5g59160.2 68418.m07415 serine/threonine protein phosphatase PP...    31   1.1  
At5g59160.1 68418.m07414 serine/threonine protein phosphatase PP...    31   1.1  
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP...    31   1.4  
At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP...    31   1.4  
At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP...    29   3.3  
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    28   7.7  

>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
           isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
           identical to SP|P48483 Serine/threonine protein
           phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
           GI:166799 from [Arabidopsis thaliana]
          Length = 322

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3   LMCSFQILKPADKR-KCDSGLNMGRPNTPPR 92
           L CSFQILK ++K+     G N GR  TPPR
Sbjct: 286 LTCSFQILKASEKKGNFGFGKNAGRRGTPPR 316


>At4g11240.1 68417.m01820 serine/threonine protein phosphatase PP1
           isozyme 6 (PP1BG) (TOPP6) identical to SP|P48486
           Serine/threonine protein phosphatase PP1 isozyme 6 (EC
           3.1.3.16) {Arabidopsis thaliana}
          Length = 322

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 3   LMCSFQILKPADKR-KCDSGLNMGRPNTPPRAQPKNK 110
           L CSFQILK ++K+ +     N+ RP TPP    K +
Sbjct: 286 LTCSFQILKASEKKGRFGFNNNVPRPGTPPHKGGKGR 322


>At5g59160.2 68418.m07415 serine/threonine protein phosphatase PP1
           isozyme 2 (TOPP2) identical to SP|P48482
           Serine/threonine protein phosphatase PP1 isozyme 2 (EC
           3.1.3.16) {Arabidopsis thaliana}
          Length = 312

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 3   LMCSFQILKPADKR 44
           LMCSFQILKPAD++
Sbjct: 295 LMCSFQILKPADRK 308


>At5g59160.1 68418.m07414 serine/threonine protein phosphatase PP1
           isozyme 2 (TOPP2) identical to SP|P48482
           Serine/threonine protein phosphatase PP1 isozyme 2 (EC
           3.1.3.16) {Arabidopsis thaliana}
          Length = 312

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 3   LMCSFQILKPADKR 44
           LMCSFQILKPAD++
Sbjct: 295 LMCSFQILKPADRK 308


>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
           isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
           identical to SP|P48485 Serine/threonine protein
           phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GI:166803
           {Arabidopsis thaliana}
          Length = 312

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   LMCSFQILKPADKR 44
           LMCSFQILKP D+R
Sbjct: 295 LMCSFQILKPVDRR 308


>At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP1
           isozyme 4 (TOPP4) / phosphoprotein phosphatase 1
           identical to SP|P48484 Serine/threonine protein
           phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GI:166801
           (Arabidopsis thaliana); contains a Ser/Thr protein
           phosphatase signature (PDOC00115); contains a
           metallo-phosphoesterase motif (QDOC50185)
          Length = 321

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 3   LMCSFQILKPADKR 44
           LMCSFQILKPA+K+
Sbjct: 299 LMCSFQILKPAEKK 312


>At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP1
           isozyme 1 (TOPP1) / phosphoprotein phosphatase 1
           identical to SP|P30366| Serine/threonine protein
           phosphatase PP1 isozyme 1 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GI:166572
           [Arabidopsis thaliana]
          Length = 318

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +3

Query: 3   LMCSFQILKPADKR 44
           LMCSFQILKP++K+
Sbjct: 301 LMCSFQILKPSEKK 314


>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 14  VPDPEAGRQAQV*LGPQHGPPQHAAARTAQEQEELMAPHA 133
           V D EA       L P+H  P H A +++ E+ +L+  HA
Sbjct: 299 VKDAEAYTNLLNVLAPEHKNPSHLAVKSSFERAKLVLEHA 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,635
Number of Sequences: 28952
Number of extensions: 309109
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)