Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0377.Seq
         (879 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    27   0.15 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   1.0  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 46  ILILSICVTGSFPSAFGFLFRYNVLFINFSFYRLRFRIFNYF 171
           ILIL+ C+T S  S +  +  Y     NF+   + F +FN F
Sbjct: 229 ILILAKCITSSLSSLYTCIAGYE-FNANFTISYILFALFNTF 269


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 129 VDEKNIVSEKKTKRGRKAAGDTNG 58
           V   ++   K++KR ++  GDTNG
Sbjct: 66  VQGSSLTEGKRSKRSKRPNGDTNG 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,558
Number of Sequences: 336
Number of extensions: 1948
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)