Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0377.Seq
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    30   0.50 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.5  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.5  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    27   4.7  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   6.1  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   8.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   8.1  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -1

Query: 198  APKKGRGKAKVVEDPETESVEAE---VDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEET 28
            AP+   G   + +D  T+S++ +   V+  ++V   K+K   K+ GDT+  D N K E T
Sbjct: 852  APEPTGGTNSISQDT-TQSLQMQSNSVNSSSMVDASKSKE--KSGGDTSALDSNAKNEPT 908

Query: 27   A 25
            A
Sbjct: 909  A 909


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 168  VVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAP 22
            V +   +++V +E D KN+V  K  ++  +A    N + +  +  +T P
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRKTTP 1395


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 413 LLCYITQNCSFXSVDFARHHWCLTGFFIFQFQLSSSNKTVTVITKT 276
           +LC ++QN    +VD ARH       FI  F   +  K+ T++  T
Sbjct: 610 VLCQLSQNFILPNVDVARH----VLLFILSFSPFNRKKSKTILNDT 651


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 153 ETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETA 25
           E    E E+D    V E+KTK    A+     Q+EN ++E  A
Sbjct: 179 EPTETETEIDANKAV-EEKTKMNYPASPTFTTQEENKEVESPA 220


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 79  FPSAFGFLFRYNVLFINFSFYRLRFRIFNYFCFA 180
           FP+  G  F  N L I  + Y+  FRIF +  +A
Sbjct: 159 FPTKAGLPFPSNFLVIVKAIYKQMFRIFAHMYYA 192


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 177 KAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDT 64
           + K  ED +   +E EVD+++   EKKTK+ ++   +T
Sbjct: 226 EVKNEEDDKAPKIE-EVDDESEKKEKKTKKVKETTTET 262


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/58 (20%), Positives = 31/58 (53%)
 Frame = -1

Query: 198 APKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETA 25
           +PKK + +AK    PE         +K++  +KK+K+  +++ ++  +  + + E ++
Sbjct: 50  SPKKSKKEAKRASSPEP-------SKKSVKKQKKSKKKEESSSESESESSSSESESSS 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,431
Number of Sequences: 5004
Number of extensions: 30653
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)