Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0377.Seq
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             31   0.92 
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    30   2.8  
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560...    29   3.7  
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    29   6.5  
11_06_0284 + 21909758-21913645                                         28   8.6  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    28   8.6  
01_01_0045 - 330630-331274                                             28   8.6  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 201 DAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENG 43
           D  KK R K     D ++ES   +   +    ++K +R  + + DT+ +DE+G
Sbjct: 250 DKKKKSRRKRHERSDEDSESDSDKKRHRKSRKDRKRRRSHRRSDDTSDEDESG 302


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -1

Query: 192 KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAA-----GDTNGQDENGKIEE 31
           KK   KA +VE  ETE  +    EK +  EKK K+ +K       GD   Q  +   EE
Sbjct: 330 KKKAKKASLVEG-ETEGAKDSKQEKKVKKEKKEKKKKKKVEVVDEGDVTEQSTDAPAEE 387


>01_07_0014 -
           40455673-40455723,40455815-40455892,40455987-40456049,
           40456250-40456390,40456851-40456949,40457403-40457477,
           40457556-40457652,40457738-40457805,40458456-40458512,
           40458613-40458671,40458798-40458921,40459208-40459264,
           40459378-40459457,40459585-40459793,40459868-40459986
          Length = 458

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 183 RGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETA 25
           RG AK+V        + E+DE      + T+ G  A  D +  +ENG +E  A
Sbjct: 10  RGAAKLVPVEAEPPTQEEIDEAIKAIAQHTEGGSDADEDADDGEENGNMEVDA 62


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 180 GKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAA 73
           G+  +   P    +E E DEK+  S K TK G+K A
Sbjct: 429 GQVMMEPKPVFARIETETDEKDQSSSKATKGGKKKA 464


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 192 KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEE 31
           K GR + K  E  E +  E E +E+    + + K GRK  G+   +D++   ++
Sbjct: 467 KGGREERKEEEHHEKQEKEKE-EERKEEGQNEEKEGRKEVGEEEKEDDDDDYDD 519


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 162 EDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETA 25
           EDP    +   + +K  +  KKTK  R+ AG    QD N K+EE A
Sbjct: 90  EDPADPHILRRLRKKISILFKKTKARREIAGAI--QDINEKLEEVA 133


>01_01_0045 - 330630-331274
          Length = 214

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -1

Query: 198 APKKGRGKAKVVEDPETESVEAEVDEK---NIVSEKKTKRGRKAAGDTNGQDENGKIEET 28
           +P+K R K    E+ E ++V   +      ++ +EKK K+ R+ A DT+   E  ++E T
Sbjct: 149 SPEKKRNKKNHPEEEEVKTVVKGIIVSAGDSVATEKKRKKKRERADDTDNDKE--QVEHT 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,443
Number of Sequences: 37544
Number of extensions: 186534
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)