Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0377.Seq
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.17 
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)                      31   1.2  
SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061)                  30   2.1  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 192  KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKA--AGDTNGQDENGKIEETAP 22
            K  RG          E+ +AEV E   VSE K KR  +   A +T+ +DE   +EE+ P
Sbjct: 1217 KSTRGSRATRSRKAAEAEKAEVVEVTPVSEPKPKRATRGQKASETSKKDETAVVEESKP 1275



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 195  PKKGRGKAKVVEDPETESVEAEVDEKNIVSEK--KTKRGRKAA 73
            PK+  GKA       T    ++ DE     EK   T+RGRKAA
Sbjct: 1377 PKRATGKASAKPTRSTRGKRSQTDEAPAEGEKPTSTRRGRKAA 1419


>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
          Length = 584

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -1

Query: 201 DAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDEN 46
           D  K  +GK K  E+ E E  ++E +EK    + KTK+G+K   ++  ++E+
Sbjct: 484 DGKKTKKGKKK--EESEEEEEKSE-EEKKSKKKTKTKKGKKEKQESESEEES 532


>SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061)
          Length = 337

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 192 KKGRGKAKVVEDPETESVE-AEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEET 28
           KK +     VE  E E ++  E++    +S++  + G    GD  G +++ KIE+T
Sbjct: 92  KKSKSTKVEVEQLEEELLDLGEIESIKKISQRGNEEGESKDGDNRGLEKDLKIEDT 147


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 177 KAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEE 31
           K +  E+  TES EA   +K++       R  KA      QDE G+  E
Sbjct: 454 KEEATEEKRTESEEAPKRKKSLKRRLSFSRKNKAKKTEEKQDEEGEARE 502


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 201  DAPKKGRGKAKVVEDPETE-----SVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGK 40
            D  KKG+ K K  ED E E     + + + D+K+   EKK K G++   +   ++E  K
Sbjct: 857  DNKKKGKSK-KDDEDEEAEEDGEKTKKGKTDKKDKPKEKKKKSGKEDEDEEEDEEEENK 914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,065
Number of Sequences: 59808
Number of extensions: 234999
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)