Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0377.Seq
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr...    30   1.8  
At5g64030.1 68418.m08039 dehydration-responsive protein-related ...    29   4.1  
At2g15860.1 68415.m01818 expressed protein  and genefinder             29   4.1  
At5g45520.1 68418.m05591 hypothetical protein                          29   5.4  
At3g12380.1 68416.m01543 actin/actin-like family protein similar...    28   7.2  
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    28   7.2  
At5g50830.1 68418.m06297 expressed protein                             28   9.5  
At4g32650.2 68417.m04648 inward rectifying potassium channel, pu...    28   9.5  

>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 384

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = -1

Query: 201 DAPKKGRGK-AKVVEDPETESVEAEVDEKNIVSEKK------TKRGRKAAGDTNGQDENG 43
           +A K+G+ + A+  ++ E E  EAE  E  +V +KK      T    K AG   G +E  
Sbjct: 177 EAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESMEVDTSELEKKAGSGEGAEEPS 236

Query: 42  KIE 34
           K+E
Sbjct: 237 KVE 239


>At5g64030.1 68418.m08039 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 829

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 192 KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGK 40
           KKG G A + ++ E+ S +   +EK    E+KTK     + +T  + E G+
Sbjct: 88  KKGDGDASLPKEDESSSKQDNQEEK---KEEKTKEEFTPSSETKSETEGGE 135


>At2g15860.1 68415.m01818 expressed protein  and genefinder
          Length = 512

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 183 RGKAKVVEDPETESVE-AEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETA 25
           R  A V E       E  EVDE +  S K+ ++  +A  + +  DEN K++++A
Sbjct: 67  RNAAAVAEKAAKSIAEMGEVDEDSESSAKEEEKTEEADTEQDSDDENAKLKKSA 120


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 183 RGKAKVVEDPETESVEAEVDEKN--IVSEKKTKRGRKAAGDTNGQDENGKIEE 31
           +GKA + E+ + + VEAE  + +  +  EKK     K     +G  EN  ++E
Sbjct: 681 KGKADLEEEKKQDEVEAEKSKSDEIVEGEKKPDDKSKVEKKGDGDKENADLDE 733


>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
           SP|P53946 Actin-like protein ARP5 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00022: Actin
          Length = 724

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 162 EDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKI 37
           E+PE+   E +   K ++   + K+  K  G +NG +++G I
Sbjct: 444 ENPESYLEELQAQYKEVLERVEQKKRLKTNGSSNGNNKSGGI 485


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 207 DNDAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEE 31
           D D  +KG         P ++S E E +E+    +KK KRG K+  +   QDE G  E+
Sbjct: 656 DEDRMEKGAAAFNSSWLPGSDSKEKEPEEEK-TKKKKRKRGGKSKTEKK-QDEQGLGED 712


>At5g50830.1 68418.m06297 expressed protein 
          Length = 281

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = -1

Query: 201 DAPKKGRGKAKVVEDP----ETESVEAEVDEKNIV--SEKKTKRGRK 79
           D P     + K VED     ETESV  E+ E   +   EKK +RG++
Sbjct: 197 DVPSDDDDEEKDVEDARKSMETESVTTEIKEDGSIVKKEKKERRGKR 243


>At4g32650.2 68417.m04648 inward rectifying potassium channel,
           putative (KAT3) (AKT4) (KC1) identical to K+ inward
           rectifying channel protein KC1 [Arabidopsis thaliana]
           gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
           [Arabidopsis thaliana] gi|1165000|emb|CAA63601;
           Shaker-type channel (1P/6TM), PMID:11500563
          Length = 597

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 174 AKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGK 40
           A+V E  ++E      DE+ IV+  + + G+K  G+T   D NG+
Sbjct: 550 AQVQETVQSEETPQSNDEE-IVTVSRHENGQKEVGETRKHDCNGR 593


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,191,530
Number of Sequences: 28952
Number of extensions: 158730
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)