Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0375.Seq
         (864 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3JTV1 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q7Q5G7 Cluster: ENSANGP00000013441; n=2; Culicidae|Rep:...    33   9.3  

>UniRef50_Q3JTV1 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia pseudomallei 1710b|Rep: Putative
           uncharacterized protein - Burkholderia pseudomallei
           (strain 1710b)
          Length = 342

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 399 RRRAVITSHAAPTCGARL--DARRAGSVSFPL*YINRRSFFVPDEPSPLER 545
           RRRA  T+ AAPT  ARL  D R  G       +I  R     D+P P ER
Sbjct: 222 RRRATPTARAAPTSPARLERDHRHTGERERRARHIPARQRHAVDDPQPRER 272


>UniRef50_Q7Q5G7 Cluster: ENSANGP00000013441; n=2; Culicidae|Rep:
           ENSANGP00000013441 - Anopheles gambiae str. PEST
          Length = 310

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 257 TCHLELNSEYSNYVRTRVSRKACSNLFLVIKSSGVYIFMRSKLTRYVPPTC-SYHESRGS 433
           T HL++     N    + +RKA  N+ +   S    +  +S   R   P+  SYHE R  
Sbjct: 122 TVHLQIKPFVCNVCGYKCARKATLNIHIRQHSGLKPLTCKSCPFRTADPSALSYHERRHQ 181

Query: 434 DVRCATRCETCG*RFI 481
           + + A +C+TCG R +
Sbjct: 182 NNK-AYQCKTCGLRLV 196


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,943,785
Number of Sequences: 1657284
Number of extensions: 14232371
Number of successful extensions: 33407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33399
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)