Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0375.Seq
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    32   0.091
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    30   0.37 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    28   1.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.0  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   7.9  

>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 27/73 (36%), Positives = 35/73 (47%)
 Frame = +1

Query: 538 WNVLR*YRVRASRLYRLFANRNINSIQKFDIFSVVRSVALRTIRPVWNLPLDMFFQWEFS 717
           W  L+  RV  S L +L+    I+    FD    VRS+A  TI   ++LP +M F   F 
Sbjct: 96  WLPLKQKRVLTSSLIKLW--NEIHDCVLFDAIEHVRSIA--TI--AFHLPTEMVFPGGFD 149

Query: 718 DLMVRILNFGAKA 756
           DL   IL F   A
Sbjct: 150 DLKKEILAFDKNA 162


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
 Frame = -1

Query: 243 IMQQIHRHACLWSGIR--FYDIRFSNYR 166
           ++QQ  + + LWS I+  F+DI+++NYR
Sbjct: 273 VLQQTRKESKLWSFIKKVFHDIKYANYR 300


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 128 CSLLESCNKLDTIVSGL 78
           CSLL  CN+LD + SGL
Sbjct: 146 CSLLYPCNRLDRLTSGL 162


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 323 RLYGIHAFERNSSIQNLIRDDKLGLQ 246
           RLY +   E  + +  L++DD+L LQ
Sbjct: 295 RLYEVFCEETKNDLSKLLKDDRLSLQ 320


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 365 IFMRSKLTRYVPPTCSYHESRGSD 436
           ++  S +T + P  C+Y  +RG+D
Sbjct: 279 VYFVSDITEFTPLACAYARARGAD 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,645
Number of Sequences: 5004
Number of extensions: 62230
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)