Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0375.Seq
(864 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07) 30 2.8
SB_50324| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-30) 29 3.7
SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57) 29 4.9
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.9
SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0) 29 6.5
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87) 28 8.5
SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_34964| Best HMM Match : Phage_integr_N (HMM E-Value=5.1) 28 8.5
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 28 8.5
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025) 28 8.5
SB_16023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11) 28 8.5
SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73) 28 8.5
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 28 8.5
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
Length = 659
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 190 VKSNPRPETSVSMNLLHD 243
VKSNPR E S+N+LHD
Sbjct: 393 VKSNPRQENDKSVNILHD 410
>SB_50324| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-30)
Length = 384
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 640 VRSVALRTIRPVWNLPLDMFFQWEFSDLMVRILNF 744
V V+L I P++ P+ + +W FSDL+ +I F
Sbjct: 69 VTDVSLLAIYPIFTSPVLVLGKWPFSDLVCQIQGF 103
>SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)
Length = 295
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 196 NVLDLGQTKQVINSAAAKKCGARLD 220
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 636 NVLDLGQTKQVINSAAAKKCGARLD 660
>SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 367
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 541 NVLR*YRVRASRLYRLFANR-NINSI 615
N +R R+R SR YRLFANR IN +
Sbjct: 132 NTVRKRRLRNSRTYRLFANRCKINGL 157
>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 616 NVLDLGQVKQVINSAAAKKCGARLD 640
>SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)
Length = 417
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 120 NVLDLGQVKQVINSAAAKKCGARLD 144
>SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 523 TSLPRWNVLR*YRVRASRLYRLFANRNINSIQKFDIFSVVR 645
T P + L Y R RLF N +I ++K+D +VVR
Sbjct: 29 TDRPTNSTLPQYIQYLERFKRLFVNSSIQDLKKYDAHTVVR 69
>SB_34964| Best HMM Match : Phage_integr_N (HMM E-Value=5.1)
Length = 175
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 120 NVLDLGQVKQVINSAAAKKCGARLD 144
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 1121 NVLDLGQVKQVINSAAAKKCGARLD 1145
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 1569 NVLDLGQVKQVINSAAAKKCGARLD 1593
>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
Length = 731
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 267 NVLDLGQVKQVINSAAAKKCGARLD 291
>SB_16023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 665 IVLNATLRTTEKMSNF*IEFMFRFANNRYNR 573
+V T R+ EKM+ + +F F NN +N+
Sbjct: 51 VVCTITSRSLEKMTQYKCNILFWFVNNSFNK 81
>SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 181 NVLDLGQVKQVINSAAAKKCGARLD 205
>SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11)
Length = 565
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +2
Query: 317 KACSNLFLVIKSSGVYIFMRSKLTRYVPPTCSYHESRGSDVRCATR 454
K CS ++ K GV+I + TR+ P +Y SRGS +R A+R
Sbjct: 497 KLCS---MINKLLGVWIVL--PCTRWTVPLPAYFHSRGSPLRTASR 537
>SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73)
Length = 311
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 257 NVLDLGQVKQVINSAAAKKCGARLD 281
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 1204 NVLDLGQVKQVINSAAAKKCGARLD 1228
>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 381 SLLDMYRRRAVITSHAAPTCGARLD 455
++LD+ + + VI S AA CGARLD
Sbjct: 855 NVLDLGQVKQVINSAAAKKCGARLD 879
>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 404 TCSYHESRGSDVRCATRCETCG*RFISLVIYKPSFV 511
T H +D +CA RC + G +F +V+ P+FV
Sbjct: 409 TARVHTILSTDTKCAKRCGSAG-KFDYIVLMCPTFV 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,155,677
Number of Sequences: 59808
Number of extensions: 463389
Number of successful extensions: 1151
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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