Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0375.Seq
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   2.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   2.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   4.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/79 (21%), Positives = 39/79 (49%)
 Frame = +1

Query: 523 TSLPRWNVLR*YRVRASRLYRLFANRNINSIQKFDIFSVVRSVALRTIRPVWNLPLDMFF 702
           TS+   N+LR +R+     +    +  +++ Q+F+ F+  R++     +    + + M  
Sbjct: 223 TSIQVANLLRLFRIPLVSFFS--TSPELSNKQRFEYFT--RTIPSDHYQVKAMVEIVMKM 278

Query: 703 QWEFSDLMVRILNFGAKAF 759
           +W +  ++    N+G KAF
Sbjct: 279 KWSYVSIIYEESNYGIKAF 297


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 150 SEYSNYDNSKNEYRK 194
           S Y+NY+N+ N Y K
Sbjct: 92  SNYNNYNNNYNNYNK 106



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N  YSNY+N  N Y
Sbjct: 85  LSNNYNYSNYNNYNNNY 101


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 85  LSNNYKYSNYNNYNNNY 101


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEY 188
           L  N +YSNY+N  N Y
Sbjct: 318 LSNNYKYSNYNNYNNNY 334



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 147 NSEYSNYDNSKNEY 188
           N+ Y+NY+N  N Y
Sbjct: 331 NNNYNNYNNYNNNY 344



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 150 SEYSNYDNSKNEY 188
           S Y+NY+N+ N Y
Sbjct: 325 SNYNNYNNNYNNY 337


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 138 LELNSEYSNYDNSKNEYRKI 197
           L  N +YSNY+N  N  +K+
Sbjct: 85  LSNNYKYSNYNNYNNYNKKL 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,700
Number of Sequences: 438
Number of extensions: 5584
Number of successful extensions: 31
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)