Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0375.Seq
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05680.1 68416.m00634 expressed protein                             28   7.0  
At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containi...    28   9.2  

>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 263 DKLGLQESCNKFIDTLVSGL 204
           DKL   +  NKF+DT+VSG+
Sbjct: 156 DKLATNDVVNKFVDTVVSGV 175


>At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 850

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 601 NINSIQKFD-IFSVVRSVALRTIRPVWNLPLDMFFQWEFSDLMVRILNFGAKAFVSXWVR 777
           N+ SI+K + I S V  + L   +PV N  + M+ +    D   R+ NF     V  W  
Sbjct: 486 NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTS 545

Query: 778 SXSXF 792
             + F
Sbjct: 546 MITGF 550


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,901
Number of Sequences: 28952
Number of extensions: 311930
Number of successful extensions: 705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)