Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0374.Seq
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    29   0.46 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    28   0.80 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.1  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   1.9  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 198 PINLKRPT-RSNSSITTKSEYSMDTAH*VSRRVFSVGRDSDP 320
           P+ +  P  + NSS+T  S  S   A  V RR FSV   SDP
Sbjct: 222 PVMVPNPYFQYNSSMTAPSSSSSSVAPFVPRRQFSVSSASDP 263


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -2

Query: 191 SSRQK*RDRFRYIQTYLNILLSIYPATCTYKPTILYLRINESTIIKAGNLTF 36
           SS +  +   R +Q YL+ + ++Y     Y P++L L+   +T++ A  ++F
Sbjct: 659 SSTELRQSMTRNVQNYLDYIKNLYHRLGPYDPSLLALKQKTATMLAAMLISF 710


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 449 NEFNIFCIPVVFILYLFAGSLGSSSGKFLTLALARAVF 336
           N+F IFC  ++F  Y+ + SL   S  F+ + ++R+ F
Sbjct: 105 NDFQIFCTSILFTCYIQSFSL-LISNFFIAIEVSRSFF 141


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 25  NHCPKVRLPALIIVDSFIRRYSIVGL*VHVAGYIDN 132
           N  PK+ L AL+ +DS +    ++G  +    YI N
Sbjct: 247 NELPKISLQALLEIDSIVSGVLMLGFNILTLAYIAN 282


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 539 FFLEINKWTWLI*QF**SKKKHV*IANRTN 450
           FF  +N W WL+     SK  H+   NRT+
Sbjct: 95  FFCNVNNWNWLMSV---SKYSHLQEKNRTS 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,958
Number of Sequences: 5004
Number of extensions: 35729
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)