Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0374.Seq
         (555 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   5.1  
CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein ...    23   6.7  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 198 DVFKSAKIT**ISLHTNLLKHIIIYIPSYMYL*TYYTIPAYK*VDYYQSRQSDFW 34
           D+ K  ++   I  HT   + + + I  +     +Y +   K  D+YQS ++D W
Sbjct: 423 DIAKQGELEKKIQEHTESFEQLRVQIDEHNK--NFYELKKKK--DHYQSLRNDIW 473


>CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein
           protein.
          Length = 207

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 192 KRPINLKRPTRSNSSITTKS 251
           K  IN KRP +SN S   K+
Sbjct: 20  KSAINRKRPEKSNGSTVKKT 39


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 473,091
Number of Sequences: 2352
Number of extensions: 7288
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)