Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0374.Seq
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 329 IYHRIGIATH*EDPARNSVGCVHG 258
           +Y RIG+    +  A N  G VHG
Sbjct: 224 LYIRIGLRIQSDSLAENVEGYVHG 247


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -2

Query: 434 FCIPVVFILYLFA 396
           +CIP++ I+Y ++
Sbjct: 220 YCIPMILIIYYYS 232


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 144 LKHIIIYIPSYMYL 103
           +KH ++Y+  Y YL
Sbjct: 528 IKHDMVYLQKYFYL 541


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 144 LKHIIIYIPSYMYL 103
           +KH ++Y+  Y YL
Sbjct: 528 IKHDMVYLQKYFYL 541


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 NIPWTQPTEFLAGSS 297
           NI W+ P E + GSS
Sbjct: 615 NIRWSYPGEEMGGSS 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,294
Number of Sequences: 438
Number of extensions: 2600
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)