Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0374.Seq
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi...    28   3.6  
At1g14530.2 68414.m01724 tobamovirus multiplication protein 3, p...    27   6.4  
At1g14530.1 68414.m01723 tobamovirus multiplication protein 3, p...    27   6.4  
At2g02180.1 68415.m00154 tobamovirus multiplication protein 3 (T...    27   8.4  

>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
           to CLC-b chloride channel protein GB:CAA96058 from
           [Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
           33632-33638 (1996))
          Length = 780

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 464 ANRTNNEFNIFCIPVVFILY----LFAGSLGSSSGKFLTLALARAVFCRI 327
           ++ T NEF +  + + F+LY    LF   + + SG FL + L  A + R+
Sbjct: 443 SSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPIILMGAAYGRM 492


>At1g14530.2 68414.m01724 tobamovirus multiplication protein 3,
           putative / TOM3, putative (THH1) identical to THH1
           (GI:15706301) [Arabidopsis thaliana]; supporting cDNA
           gi|15706300|dbj|AB057678.1|
          Length = 293

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 162 SLHTNLLKHIIIYIPSYMYL*TYYTIPAYK*VDYYQSR 49
           ++   +L+HI++ IPS  +  TY  +  +    YYQ+R
Sbjct: 99  NMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQAR 136


>At1g14530.1 68414.m01723 tobamovirus multiplication protein 3,
           putative / TOM3, putative (THH1) identical to THH1
           (GI:15706301) [Arabidopsis thaliana]; supporting cDNA
           gi|15706300|dbj|AB057678.1|
          Length = 293

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 162 SLHTNLLKHIIIYIPSYMYL*TYYTIPAYK*VDYYQSR 49
           ++   +L+HI++ IPS  +  TY  +  +    YYQ+R
Sbjct: 99  NMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQAR 136


>At2g02180.1 68415.m00154 tobamovirus multiplication protein 3
           (TOM3) identical to tobamovirus multiplication protein
           (TOM3) GI:15425641 from [Arabidopsis thaliana]
          Length = 303

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 159 LHTNLLKHIIIYIPSYMYL*TYYTIPAYK*VDYYQSR 49
           +   +L+HI++ IPS  +  TY  +  +    YYQ+R
Sbjct: 110 MQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQAR 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,009,141
Number of Sequences: 28952
Number of extensions: 167994
Number of successful extensions: 276
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)