Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0373.Seq
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    31   0.16 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   1.1  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    28   1.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   2.0  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    28   2.0  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   2.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   4.6  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   6.1  

>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 255 KNFLVCTLQKNKCIQVPLDLYFKTGDSIAF 344
           + F +CTL+K    Q P+D+ F  G+ + F
Sbjct: 77  EKFTLCTLKKGSVYQQPIDIIFSPGEEVFF 106


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/84 (23%), Positives = 33/84 (39%)
 Frame = -2

Query: 362 KRGGGQKGNRVSCFEIQVKWNLNAFVFLESAHEKVLPSTTTIT*HGSLSPVDVSIAACEM 183
           K   G   + +   E Q KW++   V  E  HE +L  T   T + S+  +      C  
Sbjct: 344 KESEGPNMDAIPILEEQPKWSVLQDVLNEVCHETMLADTDAETSNNSIMIMCADERTCLQ 403

Query: 182 WNGFSTTWVYRLLGSIINPQNMLI 111
              + +T  Y    S+ N  + L+
Sbjct: 404 LRDYLSTVTYDNKDSLKNMNSKLV 427


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 255 KNFLVCTLQKNKCIQVPLDLYFKTGDSIAF 344
           + F++CTL+     Q PL+L    GD + F
Sbjct: 78  REFVLCTLKPGSLYQQPLNLTITPGDEVFF 107


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
 Frame = -2

Query: 338  NRVSCFEIQVKWNLNAFVFLESAHEKVLPSTTTIT*HGSLSPVDV---SIAACEMWNGFS 168
            N  SC+ I+++W L       S  EK+L S + I     L  V+     IAA    N F 
Sbjct: 1264 NPASCYHIRIEWLLAT----ASVIEKLLQSWSRILERYGLKLVEAPIHEIAAVGELNPFD 1319

Query: 167  TTWVYRL-LGSIINPQNMLIVRSDA*MTRNTNKIKLIRYFNF 45
               +  L L     P+   +V      ++N   +K++ +F+F
Sbjct: 1320 QVSIISLALDPPPIPERAPLVNDPVNYSKNWWNVKILEHFDF 1361


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -1

Query: 789 WLVAETTIGSLIRQTFGKMPPPVLGPMRSAKSYPXFIKINDFGREAXPSIGFESNKSTHP 610
           W++ E  + S +   F K  P VL  +  A + P F+K   F  E   +IG + N   HP
Sbjct: 491 WMIYEENLPSYLSSNFLKEEPVVLFDLLRALNDPVFVK-KSFCTEG--NIGIK-NPPKHP 546

Query: 609 IT 604
           ++
Sbjct: 547 LS 548


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 743 LERCL-RRYLDPCDLPKVIPDSSKLTTSDARPXRRLVLNLIKALI 612
           L+ CL +  L   DLP ++ +  KL+   A+   RL+L    ALI
Sbjct: 386 LQACLSKNLLSEIDLPIILANLKKLSKERAKKFLRLILTSKTALI 430


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +1

Query: 145  NKRYTQVVEKPFHISQ-----AAMDTSTGDNEPCQVMVVVDGRTFSCALSRKTNAFKFH 306
            N+RY Q+VE  F   Q     A    S G N PC+ +V +         S + NA  FH
Sbjct: 1233 NRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGD-------SLQLNALNFH 1284


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 643 RRXGLASEVVNFDESGITFGRSHGSKYRRRHLSKCLP 753
           R+ GL  E V   E+   F   HG++  R+H+S  +P
Sbjct: 584 RQQGLKEERVVLLEAWKQFEAMHGTEDTRKHVSSLMP 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,757
Number of Sequences: 5004
Number of extensions: 78562
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)