Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0373.Seq
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.006
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              29   4.9  
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)                      28   8.6  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 19/26 (73%), Positives = 19/26 (73%)
 Frame = +2

Query: 431 PVVICLSQRLSHACLSASRIKAIPRM 508
           PVVICLSQRLSHACLS S      RM
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRM 160


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +2

Query: 431 PVVICLSQRLSHACLSAS 484
           PVVICLSQRLSHACLS S
Sbjct: 111 PVVICLSQRLSHACLSIS 128


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 137 WNPTNGTPKWWRSRSTFHRLLWTH 208
           W+P   T KWW  R+TF  +   H
Sbjct: 42  WHPGRSTTKWWTRRATFITIFCVH 65


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 105  SNYQHVLGINNGTQQTVHPSGGEAVPHFTGCYGH 206
            SN  HVLG  NG    VH +G  A  H  G +G+
Sbjct: 2301 SNGNHVLGNGNGNGNQVHSNGNHA--HSNGFHGN 2332


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 142  PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGR 258
            P K  T+V E   H  +   DT   D+E  +  V VDG+
Sbjct: 1711 PQKTSTEVPEPAKHFKEEIQDTHGEDDEEVEEFVEVDGK 1749


>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 782

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 142 PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGR 258
           P K  T+V E   H      DT   D+E  +  V VDG+
Sbjct: 242 PQKTSTEVPEPAKHFKDEIQDTHGKDDEEVEEFVEVDGK 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,691,912
Number of Sequences: 59808
Number of extensions: 601241
Number of successful extensions: 1269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)