Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0373.Seq
         (876 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008603-1|ABS57250.1|  584|Homo sapiens carcinoembryonic antige...    31   7.2  
EU008602-1|ABS57249.1|  503|Homo sapiens carcinoembryonic antige...    31   7.2  
EU008601-1|ABS57248.1|  491|Homo sapiens carcinoembryonic antige...    31   7.2  
EU008600-1|ABS57247.1|  596|Homo sapiens carcinoembryonic antige...    31   7.2  
AY358129-1|AAQ88496.1|  585|Homo sapiens GPAD9366 protein.             31   7.2  

>EU008603-1|ABS57250.1|  584|Homo sapiens carcinoembryonic
           antigen-related cell adhesion molecule 20 variant 5S
           protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 317 IQVKWNLNAFVFLESAHEKVLPSTTTIT*HGSLSPVDVSIAACEMWN 177
           + V+W L+    L S H ++     T+  HG L   D    ACE+WN
Sbjct: 283 VNVQWFLSGQPLLPSEHLQLSADNRTLIIHG-LQRNDTGPYACEVWN 328


>EU008602-1|ABS57249.1|  503|Homo sapiens carcinoembryonic
           antigen-related cell adhesion molecule 20 variant 4L
           protein.
          Length = 503

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 317 IQVKWNLNAFVFLESAHEKVLPSTTTIT*HGSLSPVDVSIAACEMWN 177
           + V+W L+    L S H ++     T+  HG L   D    ACE+WN
Sbjct: 283 VNVQWFLSGQPLLPSEHLQLSADNRTLIIHG-LQRNDTGPYACEVWN 328


>EU008601-1|ABS57248.1|  491|Homo sapiens carcinoembryonic
           antigen-related cell adhesion molecule 20 variant 4S
           protein.
          Length = 491

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 317 IQVKWNLNAFVFLESAHEKVLPSTTTIT*HGSLSPVDVSIAACEMWN 177
           + V+W L+    L S H ++     T+  HG L   D    ACE+WN
Sbjct: 283 VNVQWFLSGQPLLPSEHLQLSADNRTLIIHG-LQRNDTGPYACEVWN 328


>EU008600-1|ABS57247.1|  596|Homo sapiens carcinoembryonic
           antigen-related cell adhesion molecule 20 variant 5L
           protein.
          Length = 596

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 317 IQVKWNLNAFVFLESAHEKVLPSTTTIT*HGSLSPVDVSIAACEMWN 177
           + V+W L+    L S H ++     T+  HG L   D    ACE+WN
Sbjct: 283 VNVQWFLSGQPLLPSEHLQLSADNRTLIIHG-LQRNDTGPYACEVWN 328


>AY358129-1|AAQ88496.1|  585|Homo sapiens GPAD9366 protein.
          Length = 585

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 317 IQVKWNLNAFVFLESAHEKVLPSTTTIT*HGSLSPVDVSIAACEMWN 177
           + V+W L+    L S H ++     T+  HG L   D    ACE+WN
Sbjct: 283 VNVQWFLSGQPLLPSEHLQLSADNRTLIIHG-LQRNDTGPYACEVWN 328


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,678,431
Number of Sequences: 237096
Number of extensions: 2929872
Number of successful extensions: 4674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)