Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0373.Seq
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +1

Query: 130 LIMEPNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGR----TFSCALSRKTNAF 297
           ++ME    +T+ +EK F  +  ++D   G+ +  QV +  +GR    + S   ++  +  
Sbjct: 8   VVMEGGSGWTESLEKDFDKAFVSLDLLLGEVDSDQVEITYEGRQKMTSLSACFAQMMHKC 67

Query: 298 KFHLTCISKQE 330
           +F +  ISKQE
Sbjct: 68  QFMMHTISKQE 78


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 716  DPCDLPKVIPDSSKLTTSDARPXRRLVLNL 627
            D C +P +  DSSK T+SD+R    + +NL
Sbjct: 1142 DQCRVPDIDADSSKHTSSDSREVSTVTINL 1171


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 716  DPCDLPKVIPDSSKLTTSDARPXRRLVLNL 627
            D C +P +  DSSK T+SD+R    + +NL
Sbjct: 1142 DQCRVPDIDADSSKHTSSDSREVSTVTINL 1171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,564,814
Number of Sequences: 27780
Number of extensions: 454848
Number of successful extensions: 1014
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)