Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0373.Seq
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49510.1 68416.m05411 F-box family protein contains Pfam PF00...    32   0.44 
At3g16740.1 68416.m02137 F-box family protein contains F-box dom...    30   1.8  
At3g47380.1 68416.m05152 invertase/pectin methylesterase inhibit...    30   2.3  
At1g20860.1 68414.m02613 phosphate transporter family protein si...    29   5.4  
At4g08878.1 68417.m01463 inorganic phosphate transporter, putati...    28   7.1  
At1g76430.1 68414.m08885 phosphate transporter family protein si...    28   7.1  
At3g24580.1 68416.m03088 F-box family protein contains F-box dom...    28   9.4  

>At3g49510.1 68416.m05411 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 662

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 137 WNPTNGTPKWWRSRSTFHR 193
           WNP  G  KW R R+TFHR
Sbjct: 123 WNPYLGQTKWIRPRNTFHR 141



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 137 WNPTNGTPKWWRSRSTFHR 193
           WNP     KW R R+TFHR
Sbjct: 392 WNPYLCQTKWIRLRNTFHR 410


>At3g16740.1 68416.m02137 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 391

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 137 WNPTNGTPKWWRSRSTFHRL 196
           WNP +G  +W + R+++HRL
Sbjct: 125 WNPYSGQTRWIKPRNSYHRL 144


>At3g47380.1 68416.m05152 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|Q42534
           Pectinesterase 2 precursor (EC 3.1.1.11) (Pectin
           methylesterase 2) (PE 2) {Arabidopsis thaliana};
           contains Pfam profile PF04043: Plant invertase/pectin
           methylesterase inhibitor
          Length = 202

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 519 QFWFLRSYSVTWDNCGNSRANTCN 590
           QFWF  S + TW +   + ANTC+
Sbjct: 138 QFWFHMSNAQTWTSAALTNANTCS 161


>At1g20860.1 68414.m02613 phosphate transporter family protein
           similar to phosphate transporter [Catharanthus roseus]
           GI:2208908, inorganic phosphate transporter 1 [Solanum
           tuberosum] GI:1420871; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 534

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 79  VFLVIYASDLTINMFWGLIMEPNKRYTQVVEKPFHISQAAMD 204
           + L+I A    +  +W ++M    RYT +VE   +I QAA D
Sbjct: 205 LILMIGALPAALTFYWRMLMPETARYTALVEN--NIVQAAKD 244


>At4g08878.1 68417.m01463 inorganic phosphate transporter, putative
           similar to inorganic phosphate transporter (GI:3869190)
           [Arabidopsis thaliana]
          Length = 280

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +1

Query: 79  VFLVIYASDLTINMFWGLIMEPNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGR 258
           + L++ A    +  +W + M    RYT +V K  +  QAA+D +       ++   VD +
Sbjct: 199 IILMVGALPALLTYYWRMKMPETARYTALVAK--NAEQAALDMNK------EIFTEVDEK 250

Query: 259 TFSCALSRKTNAF 297
            F+  + +  N F
Sbjct: 251 RFALTICQSENWF 263


>At1g76430.1 68414.m08885 phosphate transporter family protein
           similar to phosphate transporters from [Catharanthus
           roseus] GI:2208908 and [Nicotiana tabacum] GI:12641853,
           transmembrane protein [Solanum tuberosum] GI:17065936;
           contains Pfam profile: PF00083 major facilitator
           superfamily protein
          Length = 532

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 79  VFLVIYASDLTINMFWGLIMEPNKRYTQVVEKPFHISQAAMD 204
           + L+I A    +  +W ++M    RYT +VE   ++ QAA D
Sbjct: 213 LILMIGALPAALTFYWRMLMPETARYTALVEN--NVVQAAKD 252


>At3g24580.1 68416.m03088 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 WNPTNGTPKWWRSRSTFHRL-LWTHQL 214
           WNP  G  +W  S + FH+L ++T+ L
Sbjct: 127 WNPYWGQTRWIESTNNFHKLDMYTYAL 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,467,976
Number of Sequences: 28952
Number of extensions: 426027
Number of successful extensions: 895
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)