Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0368.Seq
         (899 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    29   0.050
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    29   0.050
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   0.81 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   1.1  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 352 ENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLL 456
           ++I+ N   +  P G+ +A++G SG GK+TLL  L
Sbjct: 91  KHILKNVFGVAYP-GELLAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 352 ENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLL 456
           ++I+ N   +  P G+ +A++G SG GK+TLL  L
Sbjct: 91  KHILKNVFGVAYP-GELLAILGSSGAGKTTLLNTL 124


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 441 PAAPAGRSGNANRRRCVSGHHTAAEIQEDTRMMFQDARLLPWK 569
           P   AG SG   +   V G +   E   D   +F D + +P+K
Sbjct: 277 PVIDAGMSGPYTKGYGVMGFNEICEFTGDWTRVFDDQQKVPYK 319


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -3

Query: 174 YHHVRLQKLPRIHRQITNA*IGRNGFGNNQRQPHQAQRKTHADHN 40
           + + R++      RQ        N   NNQ   H A    HA H+
Sbjct: 291 FQNRRMKNKKNSQRQAAQQQNNNNAATNNQNHHHHAGHHIHAQHH 335


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 386 ICKSSWFRTIFSA*CLLTALSNNGVPWFRRAV 291
           +C+S  F T +   C+ + L +  +P FR+ +
Sbjct: 84  LCRSECFSTKYFVGCVESLLLSEEMPKFRKMI 115


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 415 PPPPQTDLPEYVNPVGSGRYFPRNVCLLH*ATMACPGSD 299
           PPPP        NPVG+  +   N   ++  T  C  +D
Sbjct: 736 PPPPHPHHQPPRNPVGTNPHDINNPLSVNQLTGQCVRND 774


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 415 PPPPQTDLPEYVNPVGSGRYFPRNVCLLH*ATMACPGSD 299
           PPPP        NPVG+  +   N   ++  T  C  +D
Sbjct: 628 PPPPHPHHQPPRNPVGTNPHDINNPLSVNQLTGQCVRND 666


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 820 HFWQGSNGFNRN 855
           HFW   +GF R+
Sbjct: 175 HFWHSHSGFQRS 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,494
Number of Sequences: 336
Number of extensions: 4568
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)