Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0362.Seq
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   1.5  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   2.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   8.2  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 162 VSRDIRTTTEARRPGTARNTRRPK 91
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 162 VSRDIRTTTEARRPGTARNTRRPK 91
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 466 HHVVVHNSLPTYNCVLGEINLELNFNGVLVLALQ 365
           H  V+ NS+  ++  +    +ELN++ V V  L+
Sbjct: 239 HESVLRNSMDDFHTAISSSEIELNYSNVSVSTLK 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,699
Number of Sequences: 5004
Number of extensions: 53909
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)