Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0362.Seq
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    31   1.6  
06_03_0685 - 23499779-23500204                                         28   8.7  

>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
 Frame = +1

Query: 556 SCIICVLKSRPDRANPAAHLHVHGIPSSGSEFAAXPTAHQQT*LHFFTLHYA-----VKF 720
           SC   V+  R    NP     + GIP+ G E      A +    HFF  HY      + F
Sbjct: 147 SCSDIVVNGRSIPINPNTTNFILGIPNGGLEIKHDNDAGK----HFFHQHYGSTKPLISF 202

Query: 721 YSQTKLLLG*ETNKKN------XFLIFPQKKSVFFGMANLIFXXSFKLSLW-GSF*NRFS 879
           +  TKLL     NK +       F++        FG+ N++     ++S+W G     +S
Sbjct: 203 FG-TKLLSDKGVNKLSEDDVLRCFMVIIYLDFKDFGIRNILIGPPPRISVWKGGMIKEYS 261

Query: 880 K 882
           K
Sbjct: 262 K 262


>06_03_0685 - 23499779-23500204
          Length = 141

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 4   PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 129
           P R  R RR+ P  GR+  LP    ++CR R P   R    P
Sbjct: 42  PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,611
Number of Sequences: 37544
Number of extensions: 408402
Number of successful extensions: 1291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)